Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2719

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2718: 11086 - SUPERFAMILY--SSF50475, at 72649 to 73814 11086 mRNA_2719: 11087 - Hypothetical Protein, at 74043 to 75833 11087 mRNA_2720: 11088 - Hypothetical Protein, at 76182 to 76700 11088

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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73,147 + 11086 mRNA_2718 0.43 -3.1
73,399 + 11086 mRNA_2718 0.64 -0.5
73,415 + 11086 mRNA_2718 0.66 1.7
73,445 - 11086 mRNA_2718 0.68 -3.5
73,452 - 11086 mRNA_2718 0.69 -1.9
73,538 + 11086 mRNA_2718 0.76 -0.1
73,553 - 11086 mRNA_2718 0.78 -3.5
73,583 + 11086 mRNA_2718 0.80 0.5
73,697 - 11086 mRNA_2718 0.90 -3.5
73,700 - -1.1
73,718 - -0.7
73,756 + -2.3
73,827 - -0.7
73,844 + -1.9
73,989 - 1.2
73,992 + -1.7
73,996 + -0.8
73,997 + -1.4
74,005 + -1.5
74,008 - -0.5
74,011 - -2.7
74,015 - -0.9
74,023 - -1.6
74,051 - -2.5
74,074 - -1.9
74,075 + -2.9
74,079 + -3.5
74,092 + -0.9
74,094 + -0.6
74,126 + -1.2
74,184 + -0.8
74,188 + -3.1
74,236 - 11087 mRNA_2719 0.11 -1.8
74,242 - 11087 mRNA_2719 0.11 -1.2
74,246 + 11087 mRNA_2719 0.11 -1.5
74,250 + 11087 mRNA_2719 0.12 -1.2
74,252 + 11087 mRNA_2719 0.12 -1.8
74,258 + 11087 mRNA_2719 0.12 -2.0
74,265 + 11087 mRNA_2719 0.12 -3.2
74,267 + 11087 mRNA_2719 0.13 0.6
74,269 + 11087 mRNA_2719 0.13 1.0
74,390 - 11087 mRNA_2719 0.19 -2.7
74,398 + 11087 mRNA_2719 0.20 -2.6
74,536 - 11087 mRNA_2719 0.28 -2.4
74,538 + 11087 mRNA_2719 0.28 -1.9
74,562 + 11087 mRNA_2719 0.29 -1.6
74,643 + 11087 mRNA_2719 0.34 -1.8
74,873 + 11087 mRNA_2719 0.46 -0.2
74,893 - 11087 mRNA_2719 0.47 -1.6
75,541 + 11087 mRNA_2719 0.84 1.2
75,703 - -1.7
75,817 + -1.9
75,820 - -2.0
75,826 - -0.7
75,841 + 0.4
75,842 + -2.0
75,845 + -0.6
75,848 + -1.2
75,851 + -3.2
76,148 + -4.5
76,294 - 11088 mRNA_2720 0.22 0.5
76,315 + 11088 mRNA_2720 0.26 -0.3
76,317 - 11088 mRNA_2720 0.26 1.1
76,421 - 11088 mRNA_2720 0.46 -0.6
76,458 + 11088 mRNA_2720 0.53 -3.6
76,459 - 11088 mRNA_2720 0.53 -3.7
76,460 - 11088 mRNA_2720 0.54 -1.7
76,468 + 11088 mRNA_2720 0.55 -1.3
76,507 + 11088 mRNA_2720 0.63 -2.2
76,573 - 11088 mRNA_2720 0.75 -1.0
76,605 - 11088 mRNA_2720 0.82 -0.7
76,696 - -2.3
76,720 + 0.3
76,720 + 0.9
76,739 + -0.0
76,777 - -1.3
76,782 - -0.0
76,789 + -1.2
76,799 - 0.2
76,809 + -0.9
76,816 - -0.8
76,829 - -2.1