Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2718

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2717: 11085 - HMMPfam-Nitronate monooxygenase-PF03060,SUPERFAMILY--SSF51412, at 71439 to 72597 11085 mRNA_2718: 11086 - SUPERFAMILY--SSF50475, at 72649 to 73814 11086 mRNA_2719: 11087 - Hypothetical Protein, at 74043 to 75833 11087

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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71,843 - 11085 mRNA_2717 0.35 -3.0
71,952 + 11085 mRNA_2717 0.44 -1.1
72,350 + 11085 mRNA_2717 0.79 1.0
72,407 - 11085 mRNA_2717 0.84 -1.5
72,468 - 11085 mRNA_2717 0.89 -1.2
72,536 + -0.6
72,536 + -1.3
72,547 - -0.2
72,556 + 0.0
72,563 + -2.3
72,669 + 0.4
72,837 - 11086 mRNA_2718 0.16 -0.5
72,882 + 11086 mRNA_2718 0.20 -1.4
72,887 + 11086 mRNA_2718 0.20 -0.2
72,887 + 11086 mRNA_2718 0.20 0.2
73,025 + 11086 mRNA_2718 0.32 -2.6
73,147 + 11086 mRNA_2718 0.43 -3.1
73,399 + 11086 mRNA_2718 0.64 -0.5
73,415 + 11086 mRNA_2718 0.66 1.7
73,445 - 11086 mRNA_2718 0.68 -3.5
73,452 - 11086 mRNA_2718 0.69 -1.9
73,538 + 11086 mRNA_2718 0.76 -0.1
73,553 - 11086 mRNA_2718 0.78 -3.5
73,583 + 11086 mRNA_2718 0.80 0.5
73,697 - 11086 mRNA_2718 0.90 -3.5
73,700 - -1.1
73,718 - -0.7
73,756 + -2.3
73,827 - -0.7
73,844 + -1.9
73,989 - 1.2
73,992 + -1.7
73,996 + -0.8
73,997 + -1.4
74,005 + -1.5
74,008 - -0.5
74,011 - -2.7
74,015 - -0.9
74,023 - -1.6
74,051 - -2.5
74,074 - -1.9
74,075 + -2.9
74,079 + -3.5
74,092 + -0.9
74,094 + -0.6
74,126 + -1.2
74,184 + -0.8
74,188 + -3.1
74,236 - 11087 mRNA_2719 0.11 -1.8
74,242 - 11087 mRNA_2719 0.11 -1.2
74,246 + 11087 mRNA_2719 0.11 -1.5
74,250 + 11087 mRNA_2719 0.12 -1.2
74,252 + 11087 mRNA_2719 0.12 -1.8
74,258 + 11087 mRNA_2719 0.12 -2.0
74,265 + 11087 mRNA_2719 0.12 -3.2
74,267 + 11087 mRNA_2719 0.13 0.6
74,269 + 11087 mRNA_2719 0.13 1.0
74,390 - 11087 mRNA_2719 0.19 -2.7
74,398 + 11087 mRNA_2719 0.20 -2.6
74,536 - 11087 mRNA_2719 0.28 -2.4
74,538 + 11087 mRNA_2719 0.28 -1.9
74,562 + 11087 mRNA_2719 0.29 -1.6
74,643 + 11087 mRNA_2719 0.34 -1.8