Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2705

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2704: 11072 - SUPERFAMILY--SSF54695, at 44136 to 45724 11072 mRNA_2705: 11073 - Hypothetical Protein, at 46347 to 46971 11073 mRNA_2706: 11074 - HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571, at 47300 to 48078 11074

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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45,412 + 11072 mRNA_2704 0.80 -0.8
45,441 - 11072 mRNA_2704 0.82 -0.9
45,598 + -0.2
45,917 + -1.9
46,019 - -1.2
46,022 - 0.6
46,160 - -1.1
46,174 - -3.8
46,191 + -3.1
46,198 + -2.3
46,201 + -1.8
46,292 + -2.4
46,324 + -1.2
46,340 + -1.0
46,342 - -1.5
46,346 - -0.7
46,364 + -0.6
46,481 - 11073 mRNA_2705 0.21 -3.1
46,643 - 11073 mRNA_2705 0.47 -0.8
46,779 + 11073 mRNA_2705 0.69 -2.6
46,795 + 11073 mRNA_2705 0.72 -1.5
46,795 + 11073 mRNA_2705 0.72 0.5
46,796 - 11073 mRNA_2705 0.72 -1.5
46,802 + 11073 mRNA_2705 0.73 -0.4
46,881 - 11073 mRNA_2705 0.85 -0.2
46,882 - 11073 mRNA_2705 0.86 -0.7
46,893 + 11073 mRNA_2705 0.87 -0.6
46,895 - 11073 mRNA_2705 0.88 -1.6
46,909 + -0.7
46,911 + -2.1
46,948 + -1.3
46,951 + -0.6
46,959 + -2.7
46,965 + -2.6
46,997 + 1.1
46,998 - -2.7
47,002 - -0.2
47,014 + -3.8
47,028 + 0.1
47,051 - -2.8
47,055 - -0.1
47,064 - -0.6
47,065 + 0.2
47,067 + -0.9
47,078 + -2.8
47,093 - -2.7
47,117 - -1.0
47,121 + -2.0
47,174 + -1.5
47,183 - -2.5
47,249 + -1.1
47,260 - -3.0
47,365 - -1.4
47,405 + 11074 mRNA_2706 0.13 -0.8
47,582 + 11074 mRNA_2706 0.36 0.1
47,717 + 11074 mRNA_2706 0.54 -0.9
47,950 - 11074 mRNA_2706 0.83 -0.2
47,966 + 11074 mRNA_2706 0.85 -0.2