Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2691

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2690: 11058 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 13747 to 14595 11058 mRNA_2691: 11059 - Hypothetical Protein, at 15560 to 16423 11059 mRNA_2692: 11060 - K06656 PCL1 G1/S-specific cyclin PLC1, at 16619 to 17964 11060

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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14,561 + -0.0
14,567 - -1.0
14,567 - -0.7
14,570 + -0.0
14,571 - -1.8
14,571 - -0.5
14,572 + -2.6
14,572 + -0.9
14,573 + -1.6
14,576 + 0.7
14,576 - -1.2
14,579 + -1.4
14,582 - -2.8
14,587 + 0.8
14,588 + -1.7
14,590 - -0.4
14,592 + -0.9
14,612 - -3.3
14,628 + -0.7
14,634 + -2.2
14,636 - -1.9
14,654 + -0.8
14,656 - -3.3
14,662 + -2.1
14,662 - -0.9
14,669 + -1.2
14,675 + -0.7
14,675 + -1.4
14,676 - -0.2
14,701 - 0.2
14,718 - -1.6
14,727 - -2.0
14,729 + -2.9
14,745 + -1.5
14,763 - -0.6
14,770 + -4.1
14,787 + -2.4
14,800 - -0.8
14,805 + -0.2
14,828 + -2.0
14,828 + -0.7
14,832 - -2.3
14,833 - -0.3
14,850 - -1.4
14,922 - -0.9
14,929 + -0.1
14,932 + -1.4
14,954 - -3.5
14,958 - 0.2
14,959 + -0.6
14,968 + 1.8
14,972 + -2.0
14,975 + -0.3
14,976 + -0.4
14,982 - -1.0
14,983 - -2.1
14,983 + 0.1
14,986 - 0.4
14,992 + -1.6
14,999 + -0.2
15,002 - -1.5
15,015 - -0.9
15,043 + -0.0
15,048 - -2.8
15,048 - 2.3
15,048 - -1.7
15,049 - -2.0
15,053 - -2.0
15,054 + -1.0
15,054 - -0.8
15,056 - -1.9
15,066 + -2.0
15,071 + -0.2
15,073 + -1.0
15,077 - -0.9
15,097 - -2.6
15,104 + -0.7
15,161 + -1.0
15,162 - -2.7
15,174 - 0.8
15,197 + 0.8
15,206 - -3.3
15,208 - -1.4
15,211 - -1.8
15,230 + -4.1
15,241 + -0.4
15,247 - -0.4
15,248 - -1.9
15,254 + -0.1
15,255 + 0.1
15,255 + -0.2
15,258 - 0.2
15,260 + -0.7
15,266 - -1.0
15,269 + -0.8
15,272 + -1.8
15,276 - -1.7
15,280 - -0.4
15,286 - 0.5
15,288 - -2.4
15,320 - -1.7
15,333 - -1.8
15,335 - 1.1
15,367 - -2.5
15,381 + -3.4
15,385 - -1.3
15,405 - -1.4
15,413 + -0.1
15,426 + 0.1
15,444 + -2.5
15,476 + -2.9
15,520 - -1.7
15,520 - -1.6
15,552 - -1.4
15,555 + -0.0
15,557 + -2.3
15,561 + -1.7
15,562 - -0.1
15,563 - 0.3
15,570 + -3.4
15,576 - -1.7
15,576 - -2.9
15,579 - -1.7
15,600 - -0.0
15,601 - -2.8
15,637 - -2.0
15,638 - 0.0
15,643 - -2.2
15,648 + 11059 mRNA_2691 0.10 -0.8
15,653 + 11059 mRNA_2691 0.11 -1.5
15,654 + 11059 mRNA_2691 0.11 -2.5
15,657 + 11059 mRNA_2691 0.11 -2.0
15,669 + 11059 mRNA_2691 0.13 -0.2
15,670 - 11059 mRNA_2691 0.13 -2.7
15,679 - 11059 mRNA_2691 0.14 -1.9
15,680 + 11059 mRNA_2691 0.14 -2.8
15,688 - 11059 mRNA_2691 0.15 -0.1
15,706 + 11059 mRNA_2691 0.17 -1.6
15,711 - 11059 mRNA_2691 0.17 -2.2
15,711 + 11059 mRNA_2691 0.17 -0.4
15,711 + 11059 mRNA_2691 0.17 0.6
15,711 + 11059 mRNA_2691 0.17 0.2
15,716 + 11059 mRNA_2691 0.18 -3.0
15,727 - 11059 mRNA_2691 0.19 0.3
15,728 + 11059 mRNA_2691 0.19 -3.4
15,737 + 11059 mRNA_2691 0.20 -1.2
15,749 - 11059 mRNA_2691 0.22 -2.4
15,752 + 11059 mRNA_2691 0.22 -3.4
15,774 - 11059 mRNA_2691 0.25 -0.7
15,775 + 11059 mRNA_2691 0.25 -2.5
15,777 + 11059 mRNA_2691 0.25 -2.6
15,781 - 11059 mRNA_2691 0.26 -2.8
15,820 - 11059 mRNA_2691 0.30 -0.8
15,834 + 11059 mRNA_2691 0.32 -2.3
15,834 + 11059 mRNA_2691 0.32 -0.4
15,843 + 11059 mRNA_2691 0.33 -2.1
15,851 - 11059 mRNA_2691 0.34 -1.2
15,858 + 11059 mRNA_2691 0.34 -0.0
15,859 + 11059 mRNA_2691 0.35 -0.4
15,864 - 11059 mRNA_2691 0.35 -1.7
15,864 + 11059 mRNA_2691 0.35 0.3
15,864 - 11059 mRNA_2691 0.35 -2.7
15,864 + 11059 mRNA_2691 0.35 -1.8
15,865 + 11059 mRNA_2691 0.35 -0.4
15,867 + 11059 mRNA_2691 0.36 -1.9
15,880 + 11059 mRNA_2691 0.37 0.9
15,997 - 11059 mRNA_2691 0.51 -2.8
16,001 + 11059 mRNA_2691 0.51 -1.3
16,022 - 11059 mRNA_2691 0.53 -1.3
16,022 - 11059 mRNA_2691 0.53 -1.4
16,138 - 11059 mRNA_2691 0.67 -1.2
16,153 - 11059 mRNA_2691 0.69 -1.1
16,155 + 11059 mRNA_2691 0.69 -0.1
16,174 + 11059 mRNA_2691 0.71 -1.7
16,177 + 11059 mRNA_2691 0.71 -2.8
16,184 + 11059 mRNA_2691 0.72 -1.0
16,185 + 11059 mRNA_2691 0.72 -1.0
16,213 - 11059 mRNA_2691 0.76 0.5
16,214 - 11059 mRNA_2691 0.76 2.2
16,309 + 11059 mRNA_2691 0.87 -0.5
16,319 - 11059 mRNA_2691 0.88 -3.1
16,322 - 11059 mRNA_2691 0.88 0.5
16,340 - -4.3
16,344 - -3.0
16,350 - -0.9
16,361 + -2.4
16,365 + -1.6
16,372 + 0.9
16,379 - -1.4
16,508 - -1.4
16,510 + -0.5
16,526 + 1.0
16,644 + -3.5
16,669 + 0.4
16,828 - 11060 mRNA_2692 0.16 -1.2
16,851 + 11060 mRNA_2692 0.17 -2.0
16,948 - 11060 mRNA_2692 0.24 -3.5
16,960 - 11060 mRNA_2692 0.25 -2.3
16,979 - 11060 mRNA_2692 0.27 -0.7
17,114 - 11060 mRNA_2692 0.37 -0.0
17,255 - 11060 mRNA_2692 0.47 -0.0
17,261 - 11060 mRNA_2692 0.48 -3.1