Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2682

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2681: 11049 - Hypothetical Protein, at 765943 to 766697 11049 mRNA_2682: 11050 - K00589 MET1 uroporphyrin-III C-methyltransferase, at 767694 to 769770 11050 mRNA_2683: 11051 - K07300 chaA, CAX Ca2+-H+ antiporter, at 769946 to 774939 11051

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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767,204 + -1.9
767,220 + -0.5
767,234 + -0.1
767,451 - 0.1
767,471 - -0.7
767,471 + -1.6
767,556 + -2.9
767,578 + -1.9
767,780 + -2.0
768,242 - 11050 mRNA_2682 0.26 0.6
768,350 - 11050 mRNA_2682 0.32 -1.4
768,351 - 11050 mRNA_2682 0.32 -0.2
768,842 + 11050 mRNA_2682 0.55 -1.2
768,928 - 11050 mRNA_2682 0.59 -1.8
769,104 - 11050 mRNA_2682 0.68 -2.6
769,708 - -1.3
769,779 + -0.4
769,825 + -1.8
769,911 - -1.6
770,065 + -0.2
770,157 + -3.1
770,200 - -0.1
770,328 + -2.8
770,451 - 11051 mRNA_2683 0.10 0.0
770,468 - 11051 mRNA_2683 0.10 -1.7
770,548 - 11051 mRNA_2683 0.12 -0.6
770,562 + 11051 mRNA_2683 0.12 -0.6
770,594 + 11051 mRNA_2683 0.13 1.4
770,754 - 11051 mRNA_2683 0.16 -0.7