Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2640

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2639: 11007 - HMMPfam-Glycosyl hydrolase family 26-PF02156,SUPERFAMILY--SSF51445, at 654513 to 656042 11007 mRNA_2640: 11008 - Hypothetical Protein, at 656963 to 657920 11008 mRNA_2641: 11009 - Hypothetical Protein, at 658203 to 659346 11009

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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655,990 - -1.8
656,142 + -1.2
656,158 + -0.5
656,161 + -1.8
656,328 + -1.8
656,329 - -0.7
656,461 + -1.8
656,573 - -1.9
656,596 + -2.0
656,606 - -0.6
656,769 - -1.3
656,882 + -0.8
657,163 + 11008 mRNA_2640 0.21 -2.0
657,202 - 11008 mRNA_2640 0.25 -1.7
657,202 + 11008 mRNA_2640 0.25 -0.7
657,462 - 11008 mRNA_2640 0.52 -1.8
657,487 + 11008 mRNA_2640 0.55 -1.4
657,500 - 11008 mRNA_2640 0.56 0.1
657,534 - 11008 mRNA_2640 0.60 -0.1
657,537 - 11008 mRNA_2640 0.60 -1.8
657,537 - 11008 mRNA_2640 0.60 -2.0
657,559 - 11008 mRNA_2640 0.62 0.4
657,563 + 11008 mRNA_2640 0.63 -1.5
657,569 - 11008 mRNA_2640 0.63 1.4
657,570 + 11008 mRNA_2640 0.63 0.7
657,609 - 11008 mRNA_2640 0.67 -2.2
657,615 + 11008 mRNA_2640 0.68 -0.6
657,619 + 11008 mRNA_2640 0.68 -0.6
657,619 + 11008 mRNA_2640 0.68 0.3
657,620 - 11008 mRNA_2640 0.69 -2.9
657,636 - 11008 mRNA_2640 0.70 -2.5
657,638 + 11008 mRNA_2640 0.70 -2.2
657,645 + 11008 mRNA_2640 0.71 -2.3
657,682 - 11008 mRNA_2640 0.75 -3.0
657,691 - 11008 mRNA_2640 0.76 -0.8
657,778 - 11008 mRNA_2640 0.85 -0.7
657,787 + 11008 mRNA_2640 0.86 -1.2
657,811 + 11008 mRNA_2640 0.89 -2.0
657,812 - 11008 mRNA_2640 0.89 -3.0
657,820 - 11008 mRNA_2640 0.89 -0.1
657,832 + -1.8
657,832 + -2.8
657,857 - -0.3
657,882 - -1.1
657,883 - 1.3
657,886 - -1.5
657,898 + -0.1
657,910 - -0.7
657,914 - -3.0
657,920 - -0.1
657,920 + -2.8
657,934 - -1.7
657,939 - -1.2
657,942 + -0.7
657,953 - 0.3
657,954 + -1.0
657,975 + 1.0
657,975 - -1.5
657,995 + -0.4
657,997 - -1.4
657,997 - 0.1
657,998 - -0.1
658,000 + 1.3
658,003 - -2.5
658,008 - -1.8
658,009 - -3.2
658,018 - 0.6
658,019 - 0.8
658,020 - -2.3
658,022 - -1.3
658,043 + 0.7
658,056 - -0.2
658,130 - -2.1
658,156 - -2.0
658,161 - -0.7
658,166 + -2.7
658,192 + -0.9
658,206 - 0.7
658,287 - -2.5
658,298 - -0.7
658,309 + -0.5
658,377 - 11009 mRNA_2641 0.15 -0.1
658,433 + 11009 mRNA_2641 0.20 -3.6
658,633 + 11009 mRNA_2641 0.38 -0.9
658,645 + 11009 mRNA_2641 0.39 0.6
658,769 - 11009 mRNA_2641 0.49 -0.7