Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2635

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2634: 11002 - KOG2234 Predicted UDP-galactose transporter, at 641734 to 644523 11002 mRNA_2635: 11003 - KOG2615 Permease of the major facilitator superfamily, at 644639 to 646229 11003 mRNA_2636: 11004 - K01303 APEH acylaminoacyl-peptidase, at 646481 to 649252 11004

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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643,704 - 11002 mRNA_2634 0.71 -2.1
643,713 + 11002 mRNA_2634 0.71 -2.8
643,725 + 11002 mRNA_2634 0.71 -1.6
643,793 - 11002 mRNA_2634 0.74 -4.4
644,056 - 11002 mRNA_2634 0.83 -1.2
644,060 - 11002 mRNA_2634 0.83 -2.2
644,152 + 11002 mRNA_2634 0.87 -0.4
644,175 - 11002 mRNA_2634 0.87 -1.0
644,226 + 11002 mRNA_2634 0.89 -1.4
644,433 - -3.1
644,733 + -1.6
644,761 + -1.3
644,894 + 11003 mRNA_2635 0.16 -0.6
645,042 - 11003 mRNA_2635 0.25 -1.1
645,054 + 11003 mRNA_2635 0.26 -1.8
645,119 - 11003 mRNA_2635 0.30 -2.3
645,182 - 11003 mRNA_2635 0.34 -3.2
645,317 - 11003 mRNA_2635 0.43 0.2
645,317 + 11003 mRNA_2635 0.43 0.4
645,384 + 11003 mRNA_2635 0.47 -2.3
645,394 + 11003 mRNA_2635 0.47 -2.1
645,474 - 11003 mRNA_2635 0.52 -0.7
645,634 - 11003 mRNA_2635 0.63 -2.9
645,787 - 11003 mRNA_2635 0.72 -3.0
645,908 - 11003 mRNA_2635 0.80 -1.0
645,972 - 11003 mRNA_2635 0.84 -1.7
646,089 - -3.2
646,189 + -0.1
646,220 + -2.3
646,408 + -0.3
646,424 - -0.2
646,534 - -0.4
646,573 + -1.5
646,576 - -0.1
646,580 + -0.4
646,664 + -0.6
646,811 + 11004 mRNA_2636 0.12 0.5
646,812 - 11004 mRNA_2636 0.12 -0.2
646,826 - 11004 mRNA_2636 0.12 -2.2
646,995 - 11004 mRNA_2636 0.19 -0.6
646,995 + 11004 mRNA_2636 0.19 0.8
647,213 - 11004 mRNA_2636 0.26 -2.2
647,214 + 11004 mRNA_2636 0.26 0.8
647,214 + 11004 mRNA_2636 0.26 -1.6