Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2628

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2627: 10995 - K05941 E2.3.2.15 glutathione gamma-glutamylcysteinyltransferase, at 624250 to 625308 10995 mRNA_2628: 10996 - K09468 MSN2_4 zinc finger protein MSN2/4, at 625936 to 628159 10996 mRNA_2629: 10997 - Hypothetical Protein, at 628565 to 629191 10997

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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624,948 - 10995 mRNA_2627 0.66 -2.6
625,525 + -1.9
625,526 + -0.4
625,531 + -1.4
625,652 - -1.9
625,658 - -2.7
625,663 + -1.3
625,675 + 1.6
625,692 + -3.7
625,816 - -3.1
625,821 + -2.1
625,831 + -1.8
625,942 - -0.3
626,101 + -0.0
626,398 - 10996 mRNA_2628 0.21 -0.9
626,537 + 10996 mRNA_2628 0.27 -1.7
626,542 + 10996 mRNA_2628 0.27 -2.2
626,548 + 10996 mRNA_2628 0.28 0.0
626,564 + 10996 mRNA_2628 0.28 -2.2
626,686 - 10996 mRNA_2628 0.34 -0.3
626,720 + 10996 mRNA_2628 0.35 -1.6
627,422 + 10996 mRNA_2628 0.67 0.5
627,437 + 10996 mRNA_2628 0.67 -3.1
627,582 + 10996 mRNA_2628 0.74 -2.4
627,845 - 10996 mRNA_2628 0.86 -1.9
628,056 - -0.6
628,154 + -0.2
628,203 - -3.9
628,220 - -2.0
628,281 - -2.3
628,477 - -1.6
628,531 - -0.9
628,717 - 10997 mRNA_2629 0.24 0.4
628,805 - 10997 mRNA_2629 0.38 -2.5
628,947 + 10997 mRNA_2629 0.61 -0.3
628,970 - 10997 mRNA_2629 0.65 1.2
628,971 - 10997 mRNA_2629 0.65 -0.8
629,017 - 10997 mRNA_2629 0.72 -0.5
629,095 - 10997 mRNA_2629 0.85 -0.2
629,107 - 10997 mRNA_2629 0.86 -1.1
629,121 - 10997 mRNA_2629 0.89 -4.1
629,130 + -2.9
629,155 - -2.3