Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2627

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2626: 10994 - Interpro GDP-fucose protein O-fucosyltransferase, at 621778 to 623321 10994 mRNA_2627: 10995 - K05941 E2.3.2.15 glutathione gamma-glutamylcysteinyltransferase, at 624250 to 625308 10995 mRNA_2628: 10996 - K09468 MSN2_4 zinc finger protein MSN2/4, at 625936 to 628159 10996

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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623,305 - -0.5
623,452 - -1.2
623,457 - 0.6
623,460 + -2.2
623,461 + -0.8
623,586 + 1.4
623,608 + -3.0
623,620 - -1.6
623,622 - -2.9
623,627 - -1.9
623,631 - -1.4
623,752 + -1.0
623,761 + -1.4
623,764 - -2.4
623,771 - -1.2
623,906 + -5.0
623,908 + -1.5
623,913 + -1.3
623,919 + -2.0
624,074 + -2.8
624,167 + -1.1
624,467 + 10995 mRNA_2627 0.20 -0.5
624,787 + 10995 mRNA_2627 0.51 -0.1
624,787 + 10995 mRNA_2627 0.51 -0.8
624,797 + 10995 mRNA_2627 0.52 1.7
624,948 - 10995 mRNA_2627 0.66 -2.6
625,525 + -1.9
625,526 + -0.4
625,531 + -1.4
625,652 - -1.9
625,658 - -2.7
625,663 + -1.3
625,675 + 1.6
625,692 + -3.7
625,816 - -3.1
625,821 + -2.1
625,831 + -1.8
625,942 - -0.3
626,101 + -0.0