Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2624

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2623: 10991 - K00306 PIPOX sarcosine oxidase / L-pipecolate oxidase, at 615105 to 616887 10991 mRNA_2624: 10992 - SUPERFAMILY--SSF52058, at 616981 to 618073 10992 mRNA_2625: 10993 - K20784 XEG113 arabinosyltransferase, at 618435 to 621494 10993

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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616,188 - 10991 mRNA_2623 0.61 -1.7
616,461 - 10991 mRNA_2623 0.76 -1.2
616,762 + -1.6
616,776 - -3.3
617,039 + -0.9
617,046 - -2.7
617,102 - 10992 mRNA_2624 0.11 -0.5
617,180 - 10992 mRNA_2624 0.18 -0.8
617,190 + 10992 mRNA_2624 0.19 -1.6
617,355 - 10992 mRNA_2624 0.34 -0.9
617,361 + 10992 mRNA_2624 0.35 -1.7
617,378 - 10992 mRNA_2624 0.36 -2.0
617,504 + 10992 mRNA_2624 0.48 -1.5
617,505 - 10992 mRNA_2624 0.48 -1.0
617,645 - 10992 mRNA_2624 0.61 -0.9
617,725 - 10992 mRNA_2624 0.68 -3.6
617,726 + 10992 mRNA_2624 0.68 -1.7
617,738 + 10992 mRNA_2624 0.69 0.3
617,751 - 10992 mRNA_2624 0.70 -1.6
617,759 - 10992 mRNA_2624 0.71 1.8
617,760 - 10992 mRNA_2624 0.71 -1.5
617,762 + 10992 mRNA_2624 0.71 -1.4
617,770 + 10992 mRNA_2624 0.72 -1.5
617,771 + 10992 mRNA_2624 0.72 -4.2
617,771 + 10992 mRNA_2624 0.72 -1.7
617,780 - 10992 mRNA_2624 0.73 -2.2
617,784 + 10992 mRNA_2624 0.73 -2.2
617,786 - 10992 mRNA_2624 0.74 -2.5
617,788 - 10992 mRNA_2624 0.74 -1.3
617,805 - 10992 mRNA_2624 0.75 -2.8
617,826 + 10992 mRNA_2624 0.77 0.1
617,844 - 10992 mRNA_2624 0.79 -1.8
617,847 + 10992 mRNA_2624 0.79 0.5
617,884 + 10992 mRNA_2624 0.83 -0.4
617,885 - 10992 mRNA_2624 0.83 -1.4
617,911 - 10992 mRNA_2624 0.85 -2.7
617,914 + 10992 mRNA_2624 0.85 -2.4
617,932 - 10992 mRNA_2624 0.87 -0.8
617,936 - 10992 mRNA_2624 0.87 -2.2
617,964 + 1.0
617,976 + 0.1
617,976 - -1.4
617,980 + -1.5
617,988 - -3.4
617,988 - -0.9
618,008 + -1.7
618,043 + -0.9
618,069 + -4.1
618,083 + -1.6
618,084 - -3.3
618,137 - -0.9
618,140 + -1.2
618,143 + -1.2
618,187 + -1.8
618,191 - 0.5
618,193 - 2.1
618,197 - -0.7
618,203 - -2.8
618,224 + -1.5
618,245 - -0.3
618,246 - -0.7
618,246 + -1.1
618,251 + 0.3
618,257 - -2.0
618,267 - 0.1
618,268 - -1.2
618,270 - -2.2
618,276 + 0.2
618,278 - -0.0
618,281 - -0.7
618,291 - -2.0
618,296 - -1.5
618,297 + -1.1
618,297 - -0.1
618,308 - -1.1
618,313 + -0.7
618,313 + -1.7
618,314 + -0.7
618,315 - -0.4
618,316 - -1.3
618,317 + -1.9
618,319 - -1.6
618,319 + -2.0
618,319 + 1.9
618,320 + -1.6
618,326 + 0.0
618,327 - -1.8
618,334 + -3.1
618,401 - -3.3
618,410 + -2.9
618,478 + -0.3
618,483 - -2.7
618,503 + 0.4
618,519 + -0.4
618,547 + 0.3
618,623 + -0.4
618,624 - -0.4
618,630 - -2.0
618,640 + -2.6
618,650 - -1.6
618,782 + 10993 mRNA_2625 0.11 -0.4
618,795 + 10993 mRNA_2625 0.12 -0.2
618,798 + 10993 mRNA_2625 0.12 -0.1
618,921 + 10993 mRNA_2625 0.16 -2.7