Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2623

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2622: 10990 - BLAST expressed protein [Schizophyllum commune H4-8], at 613719 to 614794 10990 mRNA_2623: 10991 - K00306 PIPOX sarcosine oxidase / L-pipecolate oxidase, at 615105 to 616887 10991 mRNA_2624: 10992 - SUPERFAMILY--SSF52058, at 616981 to 618073 10992

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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614,539 - 10990 mRNA_2622 0.76 -0.8
614,679 - 10990 mRNA_2622 0.89 -2.3
614,828 + -2.6
614,845 + 1.1
614,968 - -2.6
615,035 + -0.3
615,040 + -1.1
615,141 + -2.0
615,147 - 0.9
615,158 + -0.6
615,160 - -2.1
615,166 - -1.1
615,174 + -1.4
615,313 - 10991 mRNA_2623 0.12 -2.1
615,351 + 10991 mRNA_2623 0.14 -2.0
615,470 + 10991 mRNA_2623 0.20 -1.2
615,479 - 10991 mRNA_2623 0.21 0.2
615,739 - 10991 mRNA_2623 0.36 1.7
615,764 + 10991 mRNA_2623 0.37 0.2
615,766 + 10991 mRNA_2623 0.37 -1.0
615,842 - 10991 mRNA_2623 0.41 -0.9
616,188 - 10991 mRNA_2623 0.61 -1.7
616,461 - 10991 mRNA_2623 0.76 -1.2
616,762 + -1.6
616,776 - -3.3
617,039 + -0.9
617,046 - -2.7
617,102 - 10992 mRNA_2624 0.11 -0.5
617,180 - 10992 mRNA_2624 0.18 -0.8
617,190 + 10992 mRNA_2624 0.19 -1.6
617,355 - 10992 mRNA_2624 0.34 -0.9
617,361 + 10992 mRNA_2624 0.35 -1.7
617,378 - 10992 mRNA_2624 0.36 -2.0
617,504 + 10992 mRNA_2624 0.48 -1.5
617,505 - 10992 mRNA_2624 0.48 -1.0
617,645 - 10992 mRNA_2624 0.61 -0.9
617,725 - 10992 mRNA_2624 0.68 -3.6
617,726 + 10992 mRNA_2624 0.68 -1.7
617,738 + 10992 mRNA_2624 0.69 0.3
617,751 - 10992 mRNA_2624 0.70 -1.6
617,759 - 10992 mRNA_2624 0.71 1.8
617,760 - 10992 mRNA_2624 0.71 -1.5
617,762 + 10992 mRNA_2624 0.71 -1.4
617,770 + 10992 mRNA_2624 0.72 -1.5
617,771 + 10992 mRNA_2624 0.72 -4.2
617,771 + 10992 mRNA_2624 0.72 -1.7
617,780 - 10992 mRNA_2624 0.73 -2.2
617,784 + 10992 mRNA_2624 0.73 -2.2
617,786 - 10992 mRNA_2624 0.74 -2.5
617,788 - 10992 mRNA_2624 0.74 -1.3
617,805 - 10992 mRNA_2624 0.75 -2.8
617,826 + 10992 mRNA_2624 0.77 0.1
617,844 - 10992 mRNA_2624 0.79 -1.8
617,847 + 10992 mRNA_2624 0.79 0.5
617,884 + 10992 mRNA_2624 0.83 -0.4
617,885 - 10992 mRNA_2624 0.83 -1.4