Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2620

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2619: 10987 - Hypothetical Protein, at 608244 to 608759 10987 mRNA_2620: 10988 - ProSiteProfiles-Filamin/ABP280 repeat profile.-PS50194,SUPERFAMILY--SSF81296, at 609303 to 611052 10988 mRNA_2621: 10989 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 611391 to 613373 10989

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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608,388 + 10987 mRNA_2619 0.28 -3.4
608,396 - 10987 mRNA_2619 0.29 0.1
608,484 - 10987 mRNA_2619 0.47 -1.1
608,486 - 10987 mRNA_2619 0.47 -0.1
608,486 + 10987 mRNA_2619 0.47 -2.4
608,511 - 10987 mRNA_2619 0.52 -2.5
608,516 - 10987 mRNA_2619 0.53 -1.2
608,655 - 10987 mRNA_2619 0.80 0.3
608,658 - 10987 mRNA_2619 0.80 -2.6
608,663 - 10987 mRNA_2619 0.81 -1.1
608,673 + 10987 mRNA_2619 0.83 -0.7
608,688 - 10987 mRNA_2619 0.86 -2.5
608,787 + -1.8
608,794 - -1.6
608,795 + -0.4
608,804 - -1.4
608,819 + -1.6
608,837 - -1.5
608,913 + -1.7
608,936 - -2.5
608,942 - -1.4
608,945 - -0.1
608,946 - 0.2
608,947 + -1.3
608,950 - 0.2
608,952 - 0.0
608,953 - -0.7
608,953 + -2.4
608,954 - 0.7
608,958 - 0.9
608,968 + -3.0
609,004 + -0.2
609,014 + -2.4
609,030 + -1.2
609,031 + -2.4
609,069 + -1.8
609,073 + -0.6
609,109 + -1.7
609,209 + -1.7
609,213 - 2.4
609,240 + -1.1
609,250 + 1.5
609,253 + -0.1
609,257 + -1.6
609,263 - -0.8
609,265 - -0.8
609,276 + -0.2
609,366 + 1.2
609,367 - -3.0
609,371 - 1.0
609,379 + 0.3
609,380 - -0.8
609,380 - 0.2
609,382 + -2.3
609,384 - -0.0
609,385 + -2.1
609,399 - -1.7
609,405 - -1.3
609,407 - -2.9
609,416 + -0.6
609,416 - -1.3
609,448 + -2.8
609,526 - 10988 mRNA_2620 0.13 -0.6
609,528 + 10988 mRNA_2620 0.13 0.7
609,537 - 10988 mRNA_2620 0.13 -0.3
609,540 + 10988 mRNA_2620 0.14 -1.3
609,546 - 10988 mRNA_2620 0.14 -1.6
609,548 + 10988 mRNA_2620 0.14 -1.7
609,548 - 10988 mRNA_2620 0.14 -2.0
609,550 + 10988 mRNA_2620 0.14 -0.8
609,562 + 10988 mRNA_2620 0.15 -0.7
609,562 + 10988 mRNA_2620 0.15 0.2
609,563 + 10988 mRNA_2620 0.15 -0.3
609,565 + 10988 mRNA_2620 0.15 -2.7
609,567 + 10988 mRNA_2620 0.15 -3.0
609,573 - 10988 mRNA_2620 0.15 0.4
609,577 + 10988 mRNA_2620 0.16 -0.8
609,593 + 10988 mRNA_2620 0.17 -3.0
609,679 + 10988 mRNA_2620 0.21 -1.7
609,688 - 10988 mRNA_2620 0.22 -1.3
609,691 + 10988 mRNA_2620 0.22 -1.2
609,694 + 10988 mRNA_2620 0.22 -1.0
609,701 - 10988 mRNA_2620 0.23 -1.1
609,704 - 10988 mRNA_2620 0.23 -1.1
609,721 - 10988 mRNA_2620 0.24 -1.5
609,725 + 10988 mRNA_2620 0.24 -1.1
609,771 + 10988 mRNA_2620 0.27 0.3
609,838 + 10988 mRNA_2620 0.31 -1.1
609,858 + 10988 mRNA_2620 0.32 -0.8
610,005 - 10988 mRNA_2620 0.40 -1.5
610,134 - 10988 mRNA_2620 0.47 -1.8
610,161 - 10988 mRNA_2620 0.49 -1.9
610,424 - 10988 mRNA_2620 0.64 -2.1
610,453 - 10988 mRNA_2620 0.66 0.3
610,570 - 10988 mRNA_2620 0.72 -1.0
610,864 + 10988 mRNA_2620 0.89 -0.1
610,881 - -1.3
610,885 + 1.0
610,901 - -0.1
611,012 - -0.9
611,025 + -0.9
611,106 + -2.9
611,132 - -2.8
611,143 - -3.3
611,153 - 0.9
611,153 - -0.2
611,153 - -1.1
611,162 + -0.6
611,164 - -3.2
611,165 + -3.9
611,166 + -2.1
611,180 + -1.1
611,182 - -3.0
611,182 + -1.5
611,183 - 0.2
611,184 - -0.3
611,184 - -1.1
611,184 - -3.7
611,190 - -1.9
611,194 + -3.8
611,199 + -1.5
611,199 + -1.4
611,209 + -3.1
611,209 + -1.8
611,210 + 0.4
611,210 + -2.2
611,210 - -3.1
611,211 + -2.0
611,245 + 0.2
611,246 - -1.1
611,246 - -1.6
611,252 + -0.6
611,254 + -1.4
611,263 + -3.3
611,265 + -1.5
611,300 - -0.1
611,302 - -3.1
611,314 + -1.2
611,314 - -2.8
611,316 - -0.1
611,320 - 0.1
611,330 + -2.7
611,332 + 0.1
611,334 + -2.9
611,338 - -2.5
611,341 - -0.9
611,355 - -3.5
611,363 + -0.9
611,455 - -2.9
611,476 + -1.3
611,612 + 10989 mRNA_2621 0.11 0.4
611,614 - 10989 mRNA_2621 0.11 -1.0
611,632 - 10989 mRNA_2621 0.12 -1.3
611,632 - 10989 mRNA_2621 0.12 0.1
611,682 - 10989 mRNA_2621 0.15 -1.4
611,746 - 10989 mRNA_2621 0.18 -0.7
611,748 - 10989 mRNA_2621 0.18 -3.7
611,749 - 10989 mRNA_2621 0.18 -2.3
611,773 + 10989 mRNA_2621 0.19 -0.7
611,792 + 10989 mRNA_2621 0.20 -3.3
611,793 - 10989 mRNA_2621 0.20 -1.5
611,805 - 10989 mRNA_2621 0.21 -0.6
611,812 + 10989 mRNA_2621 0.21 -2.7
611,819 - 10989 mRNA_2621 0.22 0.5
611,848 + 10989 mRNA_2621 0.23 1.0
611,891 - 10989 mRNA_2621 0.25 -1.7
611,906 - 10989 mRNA_2621 0.26 -0.3
611,929 - 10989 mRNA_2621 0.27 -3.3
611,982 + 10989 mRNA_2621 0.30 -3.0
612,051 - 10989 mRNA_2621 0.33 -0.7