Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2603

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2602: 10970 - HMMPfam-Glycosyltransferase family 10 (fucosyltransferase)-PF00852,SUPERFAMILY--SSF53756, at 572350 to 572862 10970 mRNA_2603: 10971 - Hypothetical Protein, at 573332 to 575202 10971 mRNA_2604: 10972 - BLAST Esterase, SGNH hydrolase-type domain protein [Rho..., at 575232 to 576935 10972

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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572,503 + 10970 mRNA_2602 0.30 -0.6
572,505 + 10970 mRNA_2602 0.30 -0.7
572,552 + 10970 mRNA_2602 0.39 -0.1
572,573 + 10970 mRNA_2602 0.43 -1.9
572,746 - 10970 mRNA_2602 0.77 -1.9
572,759 + 10970 mRNA_2602 0.80 0.1
572,841 - -0.8
573,081 - -1.9
573,107 + -2.1
573,236 + 0.7
573,249 - -2.9
573,264 - 0.1
573,265 + -0.7
573,285 - 0.7
573,447 - 0.7
573,539 - 10971 mRNA_2603 0.11 -2.4
573,717 + 10971 mRNA_2603 0.21 -0.5
573,724 - 10971 mRNA_2603 0.21 -4.4
573,739 + 10971 mRNA_2603 0.22 -0.9
573,740 - 10971 mRNA_2603 0.22 -0.6
573,870 - 10971 mRNA_2603 0.29 -3.6
573,885 + 10971 mRNA_2603 0.30 -3.7
573,919 - 10971 mRNA_2603 0.31 0.0
574,011 - 10971 mRNA_2603 0.36 -2.1
574,042 + 10971 mRNA_2603 0.38 -1.3
574,146 - 10971 mRNA_2603 0.44 -1.5
574,289 + 10971 mRNA_2603 0.51 -0.4
574,457 - 10971 mRNA_2603 0.60 -1.2
574,615 - 10971 mRNA_2603 0.69 -2.5
574,630 - 10971 mRNA_2603 0.69 -2.1
574,960 + 10971 mRNA_2603 0.87 -0.1
575,099 + -1.3
575,269 + 1.1
575,325 - -4.0
575,337 + -0.3
575,673 + 10972 mRNA_2604 0.26 -0.7
575,797 - 10972 mRNA_2604 0.33 -1.9
575,817 - 10972 mRNA_2604 0.34 -2.7
575,817 + 10972 mRNA_2604 0.34 -0.4
575,825 + 10972 mRNA_2604 0.35 -1.2
575,947 - 10972 mRNA_2604 0.42 -0.4
575,973 - 10972 mRNA_2604 0.43 -0.3
575,980 + 10972 mRNA_2604 0.44 -3.2
576,119 - 10972 mRNA_2604 0.52 -2.1