Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2596

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2595: 10963 - K14012 SHP1, UBX1, NSFL1C UBX domain-containing protein 1, at 559652 to 561565 10963 mRNA_2596: 10964 - K00966 GMPP mannose-1-phosphate guanylyltransferase, at 561715 to 563654 10964 mRNA_2597: 10965 - Hypothetical Protein, at 564104 to 565284 10965

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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561,679 + 1.4
561,681 + 0.0
561,688 + -0.8
561,689 + 0.4
561,819 + 1.2
561,839 + -0.6
561,847 - -0.4
562,000 - 10964 mRNA_2596 0.15 -3.3
562,036 + 10964 mRNA_2596 0.17 -2.3
562,117 - 10964 mRNA_2596 0.21 -0.8
562,125 + 10964 mRNA_2596 0.21 -2.9
562,137 - 10964 mRNA_2596 0.22 -0.3
562,140 + 10964 mRNA_2596 0.22 -0.1
562,287 - 10964 mRNA_2596 0.29 -2.8
562,724 + 10964 mRNA_2596 0.52 -2.0
562,860 - 10964 mRNA_2596 0.59 -1.9
563,297 + 10964 mRNA_2596 0.82 0.8
563,423 - 10964 mRNA_2596 0.88 -0.1
563,572 + -2.6
563,718 - -0.5
563,736 - -0.7
563,758 + 0.0
563,821 + -2.4
563,861 + 0.4
563,866 - -3.0
563,894 - -1.1
563,894 - -4.5
563,904 + 0.8
563,915 - -0.3
563,953 - -0.8
563,991 - -0.8
564,023 + -0.4
564,037 - 0.9
564,042 - -2.1
564,064 + -2.6
564,108 + 1.9
564,200 - -0.4
564,208 - -1.5
564,209 - -0.3
564,288 - 10965 mRNA_2597 0.16 -1.1
564,351 - 10965 mRNA_2597 0.21 -1.7
564,355 - 10965 mRNA_2597 0.21 -2.3
564,357 + 10965 mRNA_2597 0.21 1.9
564,402 - 10965 mRNA_2597 0.25 -0.5
564,481 + 10965 mRNA_2597 0.32 0.7
564,508 + 10965 mRNA_2597 0.34 1.1