Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2595

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2594: 10962 - K12200 PDCD6IP, ALIX, RIM20 programmed cell death 6-interacting protein, at 556139 to 559559 10962 mRNA_2595: 10963 - K14012 SHP1, UBX1, NSFL1C UBX domain-containing protein 1, at 559652 to 561565 10963 mRNA_2596: 10964 - K00966 GMPP mannose-1-phosphate guanylyltransferase, at 561715 to 563654 10964

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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558,709 + 10962 mRNA_2594 0.75 -1.0
559,284 + -3.2
559,287 - -2.0
559,588 - -0.4
559,589 - 0.3
559,590 - -2.0
560,057 - 10963 mRNA_2595 0.21 0.5
560,065 - 10963 mRNA_2595 0.22 -1.7
561,679 + 1.4
561,681 + 0.0
561,688 + -0.8
561,689 + 0.4
561,819 + 1.2
561,839 + -0.6
561,847 - -0.4
562,000 - 10964 mRNA_2596 0.15 -3.3
562,036 + 10964 mRNA_2596 0.17 -2.3
562,117 - 10964 mRNA_2596 0.21 -0.8
562,125 + 10964 mRNA_2596 0.21 -2.9
562,137 - 10964 mRNA_2596 0.22 -0.3
562,140 + 10964 mRNA_2596 0.22 -0.1
562,287 - 10964 mRNA_2596 0.29 -2.8