Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2594

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2593: 10961 - K15115 SLC25A32, MFT solute carrier family 25 (mitochondrial folate transporter), member 32, at 554356 to 555895 10961 mRNA_2594: 10962 - K12200 PDCD6IP, ALIX, RIM20 programmed cell death 6-interacting protein, at 556139 to 559559 10962 mRNA_2595: 10963 - K14012 SHP1, UBX1, NSFL1C UBX domain-containing protein 1, at 559652 to 561565 10963

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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555,915 - -0.9
556,039 - -3.1
556,192 - -2.3
556,214 - -1.5
556,264 + -3.6
556,486 - 10962 mRNA_2594 0.10 -1.0
556,804 + 10962 mRNA_2594 0.19 -0.4
556,943 - 10962 mRNA_2594 0.24 -2.2
556,945 - 10962 mRNA_2594 0.24 -0.7
556,987 + 10962 mRNA_2594 0.25 -1.7
557,055 - 10962 mRNA_2594 0.27 -1.1
557,055 + 10962 mRNA_2594 0.27 -1.5
557,319 - 10962 mRNA_2594 0.34 -2.5
557,431 + 10962 mRNA_2594 0.38 -2.5
557,558 - 10962 mRNA_2594 0.41 1.9
557,613 - 10962 mRNA_2594 0.43 -1.1
557,633 + 10962 mRNA_2594 0.44 0.1
557,646 - 10962 mRNA_2594 0.44 -3.5
558,069 + 10962 mRNA_2594 0.56 -0.8
558,709 + 10962 mRNA_2594 0.75 -1.0
559,284 + -3.2
559,287 - -2.0
559,588 - -0.4
559,589 - 0.3
559,590 - -2.0
560,057 - 10963 mRNA_2595 0.21 0.5
560,065 - 10963 mRNA_2595 0.22 -1.7