Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2578

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2577: 10945 - HMMPfam-Protein of unknown function (DUF3767)-PF12597, at 482367 to 483175 10945 mRNA_2578: 10946 - KOG3574 Acetyl-CoA transporter, at 483636 to 486060 10946 mRNA_2579: 10947 - K10597 UBE4B, UFD2 ubiquitin conjugation factor E4 B, at 486195 to 490612 10947

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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483,222 + 0.8
483,389 - 0.2
483,527 + -2.9
483,629 + -0.4
483,887 - 10946 mRNA_2578 0.10 -1.9
484,079 - 10946 mRNA_2578 0.18 -1.8
484,120 - 10946 mRNA_2578 0.20 -1.4
484,390 + 10946 mRNA_2578 0.31 -2.7
484,439 - 10946 mRNA_2578 0.33 -2.7
484,508 + 10946 mRNA_2578 0.36 -2.0
484,538 - 10946 mRNA_2578 0.37 -0.6
484,539 + 10946 mRNA_2578 0.37 -1.7
484,553 + 10946 mRNA_2578 0.38 -2.6
484,662 + 10946 mRNA_2578 0.42 -1.6
484,712 + 10946 mRNA_2578 0.44 -3.1
484,834 - 10946 mRNA_2578 0.49 -1.1
485,052 - 10946 mRNA_2578 0.58 1.1
485,097 + 10946 mRNA_2578 0.60 -2.2
485,097 + 10946 mRNA_2578 0.60 -2.4
485,834 + -2.1
485,845 + -0.5
485,862 - -2.0
485,987 - -3.1
485,992 + -1.3
486,000 + 0.9
486,000 + -0.8
486,117 - -1.6
486,121 + -2.5
486,124 - -0.3
486,151 - -0.6
486,194 - -0.7
486,431 - 0.6
486,604 + -1.6
486,693 + 10947 mRNA_2579 0.11 0.9
486,765 + 10947 mRNA_2579 0.13 -0.6
487,035 - 10947 mRNA_2579 0.19 -1.2