Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2571

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2570: 10938 - SUPERFAMILY--SSF52266, at 468329 to 470280 10938 mRNA_2571: 10939 - HMMPfam-Methyltransferase domain-PF13679, at 470466 to 472507 10939 mRNA_2572: 10940 - K13093 HTATSF1 HIV Tat-specific factor 1, at 472476 to 474035 10940

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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469,525 - 10938 mRNA_2570 0.61 1.0
469,755 + 10938 mRNA_2570 0.73 1.8
469,789 - 10938 mRNA_2570 0.75 -0.7
469,806 + 10938 mRNA_2570 0.76 -4.0
469,899 - 10938 mRNA_2570 0.80 -1.4
470,059 + 10938 mRNA_2570 0.89 -0.7
470,132 - -1.1
470,136 + -0.6
470,219 - 0.5
470,230 - -1.0
470,334 - 0.0
470,364 + -0.5
470,370 - -3.2
470,378 + -1.1
470,392 + -1.3
470,414 + -1.4
470,414 + -2.0
470,454 + -1.5
470,458 + -0.7
470,473 + -0.5
471,051 - 10939 mRNA_2571 0.29 -2.6
471,311 - 10939 mRNA_2571 0.41 -1.8
471,504 + 10939 mRNA_2571 0.51 -2.9
471,909 + 10939 mRNA_2571 0.71 -2.7
472,058 + 10939 mRNA_2571 0.78 -1.9
472,092 - 10939 mRNA_2571 0.80 -2.5
472,180 + 10939 mRNA_2571 0.84 0.2
472,192 - 10939 mRNA_2571 0.85 -1.4
472,207 - 10939 mRNA_2571 0.85 1.5
472,335 - -3.7
472,355 - 0.2
472,357 + -2.3
472,488 - -4.6