Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2570

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2569: 10937 - K07250 gabT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 466083 to 468142 10937 mRNA_2570: 10938 - SUPERFAMILY--SSF52266, at 468329 to 470280 10938 mRNA_2571: 10939 - HMMPfam-Methyltransferase domain-PF13679, at 470466 to 472507 10939

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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467,620 - 10937 mRNA_2569 0.75 -1.4
467,871 + 10937 mRNA_2569 0.87 -1.9
468,063 - -4.1
468,349 + -1.9
468,356 + -2.6
468,459 - -2.2
468,636 - 10938 mRNA_2570 0.16 -0.9
468,661 + 10938 mRNA_2570 0.17 0.2
468,924 + 10938 mRNA_2570 0.30 -0.6
469,264 - 10938 mRNA_2570 0.48 -1.1
469,383 - 10938 mRNA_2570 0.54 -0.7
469,525 - 10938 mRNA_2570 0.61 1.0
469,755 + 10938 mRNA_2570 0.73 1.8
469,789 - 10938 mRNA_2570 0.75 -0.7
469,806 + 10938 mRNA_2570 0.76 -4.0
469,899 - 10938 mRNA_2570 0.80 -1.4
470,059 + 10938 mRNA_2570 0.89 -0.7
470,132 - -1.1
470,136 + -0.6
470,219 - 0.5
470,230 - -1.0
470,334 - 0.0
470,364 + -0.5
470,370 - -3.2
470,378 + -1.1
470,392 + -1.3
470,414 + -1.4
470,414 + -2.0
470,454 + -1.5
470,458 + -0.7
470,473 + -0.5
471,051 - 10939 mRNA_2571 0.29 -2.6