Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2569

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2568: 10936 - KOG2504 Monocarboxylate transporter, at 463556 to 465484 10936 mRNA_2569: 10937 - K07250 gabT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 466083 to 468142 10937 mRNA_2570: 10938 - SUPERFAMILY--SSF52266, at 468329 to 470280 10938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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465,364 + -1.9
465,378 - -0.0
465,379 + -2.1
465,390 - 0.9
465,531 - 1.0
465,666 - -1.5
465,667 - -0.9
465,674 - -0.7
465,684 + -2.5
465,687 + -2.7
465,693 + -1.3
465,725 + -0.1
465,732 + -0.2
465,822 - -0.7
465,855 - 0.6
465,857 - -0.1
465,877 + -2.7
465,888 - -1.3
465,889 - -3.2
465,892 + -5.5
465,903 + -1.1
465,912 - -0.6
465,920 + -1.7
465,928 - -0.5
465,965 - -1.6
465,987 + -2.5
465,990 + 0.1
466,014 + 0.4
466,015 - -2.0
466,021 + -2.8
466,155 - -1.2
466,157 + -0.3
466,309 - 10937 mRNA_2569 0.11 -1.5
466,500 + 10937 mRNA_2569 0.20 -1.6
466,507 + 10937 mRNA_2569 0.21 0.1
466,775 + 10937 mRNA_2569 0.34 -0.8
467,033 - 10937 mRNA_2569 0.46 0.3
467,047 - 10937 mRNA_2569 0.47 2.1
467,184 + 10937 mRNA_2569 0.53 0.1
467,248 + 10937 mRNA_2569 0.57 -2.3
467,620 - 10937 mRNA_2569 0.75 -1.4
467,871 + 10937 mRNA_2569 0.87 -1.9
468,063 - -4.1
468,349 + -1.9
468,356 + -2.6
468,459 - -2.2
468,636 - 10938 mRNA_2570 0.16 -0.9
468,661 + 10938 mRNA_2570 0.17 0.2
468,924 + 10938 mRNA_2570 0.30 -0.6