Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2568

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2567: 10935 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 461158 to 463055 10935 mRNA_2568: 10936 - KOG2504 Monocarboxylate transporter, at 463556 to 465484 10936 mRNA_2569: 10937 - K07250 gabT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 466083 to 468142 10937

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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462,694 - 10935 mRNA_2567 0.81 -1.4
462,886 + -1.8
463,011 + -3.4
463,143 - -1.6
463,260 + 1.1
463,456 + -1.3
463,474 + -0.7
463,523 - -1.0
463,527 - -3.0
463,535 - -2.3
463,537 - -1.3
463,579 + -3.3
463,649 - -1.0
463,686 + -2.1
463,687 - -2.0
463,747 + 0.4
463,835 + 10936 mRNA_2568 0.14 -2.0
463,842 + 10936 mRNA_2568 0.15 -0.7
463,925 - 10936 mRNA_2568 0.19 -0.8
463,956 + 10936 mRNA_2568 0.21 -1.9
464,037 - 10936 mRNA_2568 0.25 -3.8
464,062 - 10936 mRNA_2568 0.26 0.9
464,082 + 10936 mRNA_2568 0.27 -3.3
464,226 + 10936 mRNA_2568 0.35 -1.5
464,796 - 10936 mRNA_2568 0.64 -1.7
465,364 + -1.9
465,378 - -0.0
465,379 + -2.1
465,390 - 0.9
465,531 - 1.0
465,666 - -1.5
465,667 - -0.9
465,674 - -0.7
465,684 + -2.5
465,687 + -2.7
465,693 + -1.3
465,725 + -0.1
465,732 + -0.2
465,822 - -0.7
465,855 - 0.6
465,857 - -0.1
465,877 + -2.7
465,888 - -1.3
465,889 - -3.2
465,892 + -5.5
465,903 + -1.1
465,912 - -0.6
465,920 + -1.7
465,928 - -0.5
465,965 - -1.6
465,987 + -2.5
465,990 + 0.1
466,014 + 0.4
466,015 - -2.0
466,021 + -2.8
466,155 - -1.2
466,157 + -0.3
466,309 - 10937 mRNA_2569 0.11 -1.5