Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2567

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2566: 10934 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 458931 to 461054 10934 mRNA_2567: 10935 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 461158 to 463055 10935 mRNA_2568: 10936 - KOG2504 Monocarboxylate transporter, at 463556 to 465484 10936

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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460,248 - 10934 mRNA_2566 0.62 -2.6
460,359 - 10934 mRNA_2566 0.67 -1.5
460,583 - 10934 mRNA_2566 0.78 -2.7
460,662 - 10934 mRNA_2566 0.81 -1.9
460,919 + -1.0
461,067 + -0.8
461,092 - -1.0
461,368 + 10935 mRNA_2567 0.11 -5.0
461,384 - 10935 mRNA_2567 0.12 -0.5
461,393 - 10935 mRNA_2567 0.12 -0.4
461,721 + 10935 mRNA_2567 0.30 -0.2
461,748 - 10935 mRNA_2567 0.31 -0.7
461,814 + 10935 mRNA_2567 0.35 -2.0
461,993 + 10935 mRNA_2567 0.44 -2.8
462,012 + 10935 mRNA_2567 0.45 -3.5
462,027 + 10935 mRNA_2567 0.46 -3.2
462,438 - 10935 mRNA_2567 0.67 -2.7
462,439 - 10935 mRNA_2567 0.67 -2.4
462,694 - 10935 mRNA_2567 0.81 -1.4
462,886 + -1.8
463,011 + -3.4
463,143 - -1.6
463,260 + 1.1
463,456 + -1.3
463,474 + -0.7
463,523 - -1.0
463,527 - -3.0
463,535 - -2.3
463,537 - -1.3
463,579 + -3.3
463,649 - -1.0
463,686 + -2.1
463,687 - -2.0
463,747 + 0.4
463,835 + 10936 mRNA_2568 0.14 -2.0
463,842 + 10936 mRNA_2568 0.15 -0.7
463,925 - 10936 mRNA_2568 0.19 -0.8
463,956 + 10936 mRNA_2568 0.21 -1.9
464,037 - 10936 mRNA_2568 0.25 -3.8