Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2566

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2565: 10933 - K00799 GST, gst glutathione S-transferase, at 457320 to 458239 10933 mRNA_2566: 10934 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 458931 to 461054 10934 mRNA_2567: 10935 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 461158 to 463055 10935

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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457,972 - 10933 mRNA_2565 0.71 0.7
458,008 - 10933 mRNA_2565 0.75 -1.3
458,162 + 1.1
458,283 - -0.6
458,426 + -0.8
458,440 - -3.3
458,443 - 1.0
458,483 - -4.1
458,596 + -1.9
458,604 - -1.2
458,605 - -3.9
458,623 - -3.2
458,629 - -2.9
458,630 - -0.1
458,749 - -1.7
458,753 - -2.0
458,762 + -0.7
458,763 + -1.7
458,783 + -2.9
458,784 + 1.6
458,788 + 0.1
458,905 + 0.8
459,072 - -1.8
459,100 - -1.6
459,389 + 10934 mRNA_2566 0.22 -0.1
459,417 - 10934 mRNA_2566 0.23 -2.1
460,080 - 10934 mRNA_2566 0.54 -1.7
460,129 + 10934 mRNA_2566 0.56 -1.7
460,248 - 10934 mRNA_2566 0.62 -2.6
460,359 - 10934 mRNA_2566 0.67 -1.5
460,583 - 10934 mRNA_2566 0.78 -2.7
460,662 - 10934 mRNA_2566 0.81 -1.9
460,919 + -1.0
461,067 + -0.8
461,092 - -1.0
461,368 + 10935 mRNA_2567 0.11 -5.0
461,384 - 10935 mRNA_2567 0.12 -0.5
461,393 - 10935 mRNA_2567 0.12 -0.4
461,721 + 10935 mRNA_2567 0.30 -0.2
461,748 - 10935 mRNA_2567 0.31 -0.7
461,814 + 10935 mRNA_2567 0.35 -2.0
461,993 + 10935 mRNA_2567 0.44 -2.8
462,012 + 10935 mRNA_2567 0.45 -3.5
462,027 + 10935 mRNA_2567 0.46 -3.2