Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2559

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2558: 10926 - KOG3183 Predicted Zn-finger protein, at 439511 to 440693 10926 mRNA_2559: 10927 - HMMPfam-Translin family-PF01997,SUPERFAMILY--SSF74784, at 441201 to 442474 10927 mRNA_2560: 10928 - Hypothetical Protein, at 443128 to 444142 10928

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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440,370 - 10926 mRNA_2558 0.73 -2.1
440,370 + 10926 mRNA_2558 0.73 -1.1
440,559 + 10926 mRNA_2558 0.89 -1.6
440,684 + -1.6
440,744 + -0.1
440,848 + -1.9
440,870 + -3.3
440,872 + 0.2
440,887 - -1.0
441,018 - -2.2
441,030 - -1.0
441,152 - -0.4
441,157 - 0.1
441,168 - 0.1
441,179 + -3.2
441,305 - -2.1
441,309 + -1.7
441,317 - -2.5
441,475 - 10927 mRNA_2559 0.22 -0.1
441,586 - 10927 mRNA_2559 0.30 -0.9
441,587 - 10927 mRNA_2559 0.30 -1.9
441,602 + 10927 mRNA_2559 0.31 -2.2
441,905 + 10927 mRNA_2559 0.55 -2.8
442,074 + 10927 mRNA_2559 0.69 -0.4
442,679 + -2.8
442,759 - -0.3
442,765 + 0.7
442,852 - -0.9
442,983 - 0.7
443,070 + -1.8
443,223 - -2.9
443,336 - 10928 mRNA_2560 0.20 -4.3
443,388 + 10928 mRNA_2560 0.26 -2.7
443,414 - 10928 mRNA_2560 0.28 -1.5