Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2536

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2534: 10902 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 384523 to 387549 10902 mRNA_2535: 10903 - Hypothetical Protein, at 387572 to 388066 10903 mRNA_2536: 10904 - K15601 KDM3 lysine-specific demethylase 3, at 388426 to 391874 10904 mRNA_2537: 10905 - BLAST Alba domain-containing protein [Rhizoctonia solani AG..., at 392613 to 393652 10905

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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387,462 + -2.1
387,470 - -1.7
387,479 + -1.2
387,484 + -2.8
387,492 - -1.8
387,608 + -0.0
387,611 - -2.7
387,615 + -1.5
387,623 - 10903 mRNA_2535 0.10 0.2
387,628 + 10903 mRNA_2535 0.11 -4.9
387,630 - 10903 mRNA_2535 0.12 -1.5
387,637 + 10903 mRNA_2535 0.13 0.4
387,637 - 10903 mRNA_2535 0.13 -0.5
387,638 - 10903 mRNA_2535 0.13 -3.2
387,639 + 10903 mRNA_2535 0.14 -1.1
387,641 + 10903 mRNA_2535 0.14 -0.0
387,641 - 10903 mRNA_2535 0.14 -0.7
387,642 - 10903 mRNA_2535 0.14 -3.5
387,643 + 10903 mRNA_2535 0.14 -1.2
387,643 - 10903 mRNA_2535 0.14 -1.5
387,644 + 10903 mRNA_2535 0.15 -2.1
387,644 + 10903 mRNA_2535 0.15 -4.7
387,644 + 10903 mRNA_2535 0.15 0.3
387,644 + 10903 mRNA_2535 0.15 -0.6
387,648 + 10903 mRNA_2535 0.15 0.8
387,649 - 10903 mRNA_2535 0.16 -4.1
387,650 - 10903 mRNA_2535 0.16 -1.8
387,652 + 10903 mRNA_2535 0.16 -0.4
387,656 + 10903 mRNA_2535 0.17 -1.1
387,658 - 10903 mRNA_2535 0.17 -1.1
387,659 + 10903 mRNA_2535 0.18 -1.0
387,665 - 10903 mRNA_2535 0.19 0.8
387,670 - 10903 mRNA_2535 0.20 -2.1
387,671 - 10903 mRNA_2535 0.20 -1.4
387,673 + 10903 mRNA_2535 0.20 -2.6
387,675 - 10903 mRNA_2535 0.21 -1.2
387,677 - 10903 mRNA_2535 0.21 -0.3
387,677 - 10903 mRNA_2535 0.21 -1.1
387,678 + 10903 mRNA_2535 0.21 -0.4
387,678 + 10903 mRNA_2535 0.21 0.5
387,678 + 10903 mRNA_2535 0.21 -2.0
387,684 - 10903 mRNA_2535 0.23 -1.0
387,686 + 10903 mRNA_2535 0.23 -0.3
387,689 + 10903 mRNA_2535 0.24 -1.0
387,695 - 10903 mRNA_2535 0.25 -2.5
387,698 + 10903 mRNA_2535 0.25 -4.5
387,698 - 10903 mRNA_2535 0.25 -2.2
387,719 + 10903 mRNA_2535 0.30 -0.9
387,721 + 10903 mRNA_2535 0.30 -1.4
387,733 + 10903 mRNA_2535 0.33 -0.7
387,749 + 10903 mRNA_2535 0.36 -1.9
387,756 - 10903 mRNA_2535 0.37 -0.9
387,765 - 10903 mRNA_2535 0.39 -3.9
387,783 - 10903 mRNA_2535 0.43 -3.0
387,792 + 10903 mRNA_2535 0.44 0.1
387,812 + 10903 mRNA_2535 0.48 -3.4
387,819 - 10903 mRNA_2535 0.50 -3.3
387,829 - 10903 mRNA_2535 0.52 -1.1
387,830 - 10903 mRNA_2535 0.52 -0.4
387,832 + 10903 mRNA_2535 0.53 -2.2
387,839 + 10903 mRNA_2535 0.54 -2.0
387,846 + 10903 mRNA_2535 0.55 0.6
387,857 - 10903 mRNA_2535 0.58 -2.8
387,857 - 10903 mRNA_2535 0.58 -1.8
387,858 - 10903 mRNA_2535 0.58 -0.3
387,873 + 10903 mRNA_2535 0.61 -0.1
387,874 - 10903 mRNA_2535 0.61 -0.6
387,877 - 10903 mRNA_2535 0.62 -2.0
387,880 + 10903 mRNA_2535 0.62 -2.6
387,881 + 10903 mRNA_2535 0.62 -1.6
387,882 + 10903 mRNA_2535 0.63 -2.0
387,885 + 10903 mRNA_2535 0.63 -2.4
387,897 - 10903 mRNA_2535 0.66 -0.4
387,901 + 10903 mRNA_2535 0.66 -0.4
387,901 - 10903 mRNA_2535 0.66 -2.2
387,902 + 10903 mRNA_2535 0.67 0.4
387,915 + 10903 mRNA_2535 0.69 -0.2
387,945 + 10903 mRNA_2535 0.75 -0.7
388,010 + 10903 mRNA_2535 0.88 -1.8
388,022 + -1.0
388,035 + -2.0
388,037 - -2.0
388,041 - 0.2
388,052 - -0.3
388,056 - -2.9
388,060 + -1.0
388,062 - -1.9
388,062 + 0.4
388,062 - -1.6
388,093 + -2.4
388,186 - -0.2
388,210 + -2.0
388,215 + -0.0
388,229 + 0.4
388,246 + -2.7
388,259 - -2.7
388,278 - 1.1
388,318 - -1.3
388,351 - 0.1
388,360 + -1.0
388,360 + -0.9
388,363 - -1.2
388,368 + -0.3
388,369 - -2.7
388,650 + -1.5
389,028 + 10904 mRNA_2536 0.17 -0.5
389,228 - 10904 mRNA_2536 0.23 -1.5
389,314 + 10904 mRNA_2536 0.26 -0.7
389,432 - 10904 mRNA_2536 0.29 -0.4
389,673 - 10904 mRNA_2536 0.36 -0.5
390,410 + 10904 mRNA_2536 0.58 -0.6
390,610 + 10904 mRNA_2536 0.63 -0.3
390,846 + 10904 mRNA_2536 0.70 0.2
391,689 - 0.4
391,689 - 0.3
391,820 + -3.2
391,966 - -3.4
392,237 + 0.5
392,259 - -0.3
392,261 + 0.5
392,284 - -1.9
392,379 + -2.8
392,402 - -3.4