Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2522

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2521: 10889 - BLAST beta-glucosidase 1 precursor [Aspergillus rambellii], at 346896 to 348680 10889 mRNA_2522: 10890 - BLAST GPI ethanolamine phosphate transferase 2 [Talaromyces..., at 348835 to 350135 10890 mRNA_2523: 10891 - Hypothetical Protein, at 351016 to 351939 10891

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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348,269 - 10889 mRNA_2521 0.77 -2.4
348,617 + -2.2
348,680 + 0.9
348,709 + 0.0
348,713 - -1.2
348,724 - -0.5
348,747 - -1.3
348,748 + -2.6
348,748 + -0.4
348,749 + -1.4
348,752 + -0.7
348,763 - 0.9
348,776 + -0.5
348,778 - -2.1
348,805 + -3.3
348,841 + -1.6
348,855 + -2.2
348,857 - -0.8
348,859 - -1.1
348,860 + -0.4
348,864 + -0.8
348,866 - -3.4
348,868 - -0.9
348,869 + 1.2
348,869 + -0.6
348,894 - -1.7
348,896 - -0.4
348,900 + -1.6
348,901 + -1.9
348,902 + -0.5
348,904 + -1.5
348,931 + -1.7
348,991 - 10890 mRNA_2522 0.12 -0.8
348,998 - 10890 mRNA_2522 0.13 -2.3
349,012 - 10890 mRNA_2522 0.14 -2.4
349,012 - 10890 mRNA_2522 0.14 0.5
349,023 - 10890 mRNA_2522 0.14 -1.8
349,031 - 10890 mRNA_2522 0.15 0.3
349,044 + 10890 mRNA_2522 0.16 -0.1
349,068 - 10890 mRNA_2522 0.18 1.0
349,181 + 10890 mRNA_2522 0.27 -1.4
349,208 - 10890 mRNA_2522 0.29 -1.7
349,210 + 10890 mRNA_2522 0.29 -0.2
349,380 + 10890 mRNA_2522 0.42 -0.0
349,512 + 10890 mRNA_2522 0.52 -2.8
349,627 - 10890 mRNA_2522 0.61 -3.3
349,913 + 10890 mRNA_2522 0.83 3.3
349,931 - 10890 mRNA_2522 0.84 0.2
349,936 + 10890 mRNA_2522 0.85 -0.9
350,418 + -0.0
350,591 + -0.1
350,629 - -4.5
350,686 + -2.3
350,951 - -0.7