Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2508

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2507: 10875 - K11232 YPD1 osomolarity two-component system, phosphorelay intermediate protein YPD1, at 314960 to 315808 10875 mRNA_2508: 10876 - BLAST proteophosphoglycan ppg4 [Lichtheimia corymbifera JMR..., at 316713 to 320410 10876 mRNA_2509: 10877 - HMMPfam-PI31 proteasome regulator-PF08577,HMMPfam-PI31 proteasome regulator N-terminal-PF11566, at 320843 to 322229 10877

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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316,297 - -0.6
316,327 + -0.6
316,347 + 0.5
316,353 - -0.7
316,415 - -1.2
316,471 + -2.2
316,488 - 1.3
316,503 + 0.4
316,503 + -0.3
316,503 + -0.8
316,505 - -0.4
316,513 + -2.9
316,517 - -3.3
316,530 + -1.5
316,531 - -0.7
316,536 + -2.7
316,536 - -2.4
316,548 + -1.7
316,618 - -1.9
316,687 - 0.5
316,703 + -1.3
317,382 + 10876 mRNA_2508 0.18 -0.7
318,169 + 10876 mRNA_2508 0.39 -2.4
318,717 - 10876 mRNA_2508 0.54 -3.6
318,746 - 10876 mRNA_2508 0.55 -1.1
318,748 - 10876 mRNA_2508 0.55 -0.3
319,240 + 10876 mRNA_2508 0.68 -0.2
319,250 + 10876 mRNA_2508 0.69 -2.4
319,302 + 10876 mRNA_2508 0.70 -1.9
319,322 + 10876 mRNA_2508 0.71 -4.1
319,325 - 10876 mRNA_2508 0.71 -2.7
319,325 - 10876 mRNA_2508 0.71 -1.2
319,325 - 10876 mRNA_2508 0.71 -0.7
319,355 + 10876 mRNA_2508 0.71 -2.4
319,375 + 10876 mRNA_2508 0.72 -0.7
319,441 - 10876 mRNA_2508 0.74 -1.3
319,925 - 10876 mRNA_2508 0.87 -2.3
320,162 - -2.4
320,246 - -0.1
320,343 - -3.2
320,347 + -2.4
320,371 - -2.1
320,406 + -1.2
320,431 - -0.6
320,431 - -2.2
320,622 - -3.8
320,623 + -1.5
320,662 + 0.8
320,791 - 0.4
320,942 - -2.9
320,946 + -1.0
321,253 + 10877 mRNA_2509 0.30 -1.7
321,258 - 10877 mRNA_2509 0.30 -0.5
321,351 - 10877 mRNA_2509 0.37 -2.5