Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2488

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2488: 10856 - KOG1804 RNA helicase, at 267770 to 269827 10856 mRNA_2489: 10857 - HMMPfam-Surfeit locus protein 5 subunit 22 of Mediator complex-PF06179, at 270221 to 270948 10857

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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266,850 - -1.4
267,068 - -1.9
267,476 - -1.1
267,563 + 2.4
267,860 - -2.7
267,971 - 0.5
268,107 + 10856 mRNA_2488 0.16 -0.2
268,244 - 10856 mRNA_2488 0.23 -0.1
268,515 - 10856 mRNA_2488 0.36 -2.6
268,562 + 10856 mRNA_2488 0.38 -0.8
268,568 - 10856 mRNA_2488 0.39 3.3
268,869 - 10856 mRNA_2488 0.53 -0.1
268,969 - 10856 mRNA_2488 0.58 -1.2
268,997 - 10856 mRNA_2488 0.60 0.5
269,100 + 10856 mRNA_2488 0.65 0.5
269,225 - 10856 mRNA_2488 0.71 -1.4
269,389 + 10856 mRNA_2488 0.79 -1.3
269,405 - 10856 mRNA_2488 0.79 -2.6
269,485 + 10856 mRNA_2488 0.83 -2.8
269,537 - 10856 mRNA_2488 0.86 1.0
269,823 + -2.5
269,829 - 0.3
269,833 + -0.7
269,888 + 0.4
270,107 - -3.1
270,182 + -2.1