Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2479

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2478: 10846 - K20293 COG6, COD2 conserved oligomeric Golgi complex subunit 6, at 243520 to 246165 10846 mRNA_2479: 10847 - Hypothetical Protein, at 246856 to 249133 10847 mRNA_2480: 10848 - KOG0907 Thioredoxin, at 249211 to 249707 10848 mRNA_2481: 10849 - Hypothetical Protein, at 250037 to 250801 10849

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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245,930 + -2.8
245,932 - -1.1
245,940 + -1.1
245,944 - -2.5
246,209 + -1.7
246,238 - -0.9
246,247 - -2.1
246,251 + -0.2
246,253 - -1.4
246,253 + -0.4
246,383 + -1.5
246,391 - -1.3
246,394 + -1.8
246,525 - -0.2
246,533 - -0.4
246,537 - 0.5
246,856 - -1.0
246,862 - 1.4
247,101 - 10847 mRNA_2479 0.11 -0.4
247,383 + 10847 mRNA_2479 0.23 -3.1
247,690 - 10847 mRNA_2479 0.37 -0.7
247,864 + 10847 mRNA_2479 0.44 0.9
247,865 + 10847 mRNA_2479 0.44 -1.5
247,965 + 10847 mRNA_2479 0.49 3.1
247,984 + 10847 mRNA_2479 0.50 -0.1
248,277 - 10847 mRNA_2479 0.62 -2.9
248,303 + 10847 mRNA_2479 0.64 -2.0
248,379 - 10847 mRNA_2479 0.67 -3.3
248,746 + 10847 mRNA_2479 0.83 -0.4
249,000 + -2.2
249,276 - 10848 mRNA_2480 0.13 -2.7
249,293 - 10848 mRNA_2480 0.16 -0.4
249,423 - 10848 mRNA_2480 0.43 0.8
249,719 + -0.7
249,864 - -1.1
249,869 + -0.7
249,874 - -1.6
249,885 + -1.8
250,016 + -1.8
250,042 - -2.3
250,049 - -2.4
250,054 + -0.7
250,085 - -4.1
250,100 + -1.8
250,108 + -2.4