Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2478

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2477: 10845 - K00560 thyA, TYMS thymidylate synthase, at 242038 to 243139 10845 mRNA_2478: 10846 - K20293 COG6, COD2 conserved oligomeric Golgi complex subunit 6, at 243520 to 246165 10846 mRNA_2479: 10847 - Hypothetical Protein, at 246856 to 249133 10847

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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243,285 + -0.7
243,304 - -0.5
243,308 + -1.1
243,398 - -3.2
243,434 - -2.1
243,438 + -1.9
243,458 + -2.7
243,458 + 0.9
243,466 + -0.8
243,600 - 0.3
243,746 + -1.9
244,266 - 10846 mRNA_2478 0.28 -1.0
244,345 - 10846 mRNA_2478 0.31 -4.1
244,498 - 10846 mRNA_2478 0.37 -0.4
245,062 + 10846 mRNA_2478 0.58 -0.6
245,087 + 10846 mRNA_2478 0.59 -2.7
245,165 - 10846 mRNA_2478 0.62 -3.9
245,357 - 10846 mRNA_2478 0.69 0.1
245,507 - 10846 mRNA_2478 0.75 0.6
245,816 - 10846 mRNA_2478 0.87 0.2
245,930 + -2.8
245,932 - -1.1
245,940 + -1.1
245,944 - -2.5
246,209 + -1.7
246,238 - -0.9
246,247 - -2.1
246,251 + -0.2
246,253 - -1.4
246,253 + -0.4
246,383 + -1.5
246,391 - -1.3
246,394 + -1.8
246,525 - -0.2
246,533 - -0.4
246,537 - 0.5
246,856 - -1.0
246,862 - 1.4
247,101 - 10847 mRNA_2479 0.11 -0.4