Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2473

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2472: 10840 - K07836 RAP1B Ras-related protein Rap-1B, at 228685 to 229666 10840 mRNA_2473: 10841 - K01610 E4.1.1.49, pckA phosphoenolpyruvate carboxykinase (ATP), at 230136 to 233558 10841 mRNA_2474: 10842 - KOG0603 Ribosomal protein S6 kinase, at 234258 to 235956 10842

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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229,652 - -0.4
229,657 + -0.0
229,804 + -0.5
230,109 + -2.4
230,544 + 10841 mRNA_2473 0.12 -2.6
231,249 + 10841 mRNA_2473 0.33 -2.1
231,260 - 10841 mRNA_2473 0.33 -2.6
231,261 + 10841 mRNA_2473 0.33 -2.0
231,421 + 10841 mRNA_2473 0.38 -2.9
231,527 - 10841 mRNA_2473 0.41 -0.1
231,546 + 10841 mRNA_2473 0.41 -1.3
231,688 - 10841 mRNA_2473 0.45 2.5
232,271 - 10841 mRNA_2473 0.62 -0.8
232,275 + 10841 mRNA_2473 0.62 -0.9
232,424 + 10841 mRNA_2473 0.67 -2.6
232,426 + 10841 mRNA_2473 0.67 -1.4
232,585 + 10841 mRNA_2473 0.72 -2.0
232,718 - 10841 mRNA_2473 0.75 -0.2
232,871 - 10841 mRNA_2473 0.80 -1.6
233,026 - 10841 mRNA_2473 0.84 -0.1
233,026 - 10841 mRNA_2473 0.84 0.1
233,030 + 10841 mRNA_2473 0.85 -1.0
233,044 - 10841 mRNA_2473 0.85 -0.5
233,049 - 10841 mRNA_2473 0.85 -1.2
233,050 - 10841 mRNA_2473 0.85 -1.6
233,053 + 10841 mRNA_2473 0.85 -3.2
233,056 + 10841 mRNA_2473 0.85 -0.0
233,058 + 10841 mRNA_2473 0.85 -3.0
233,058 + 10841 mRNA_2473 0.85 -1.2
233,061 + 10841 mRNA_2473 0.85 -1.2
233,062 + 10841 mRNA_2473 0.85 -0.7
233,067 + 10841 mRNA_2473 0.86 -3.8
233,089 - 10841 mRNA_2473 0.86 -1.1
233,199 - 10841 mRNA_2473 0.89 -0.9
233,206 - 10841 mRNA_2473 0.90 -1.1
233,209 - 10841 mRNA_2473 0.90 -1.7
233,213 + 10841 mRNA_2473 0.90 -1.2
233,224 + -2.1
233,226 - -3.4
233,234 + -0.1
233,235 - -0.8
233,235 + -3.1
233,236 + -3.0
233,236 + -2.1
233,240 - 1.9
233,242 + -0.4
233,245 - -3.7
233,247 + -0.9
233,248 + -3.2
233,249 - -2.4
233,252 - -0.6
233,257 + -1.6
233,258 + -1.5
233,258 - -0.2
233,258 + -1.7
233,260 + 0.1
233,303 - -0.8
233,304 + -2.9
233,304 + 0.8
233,309 + -1.7
233,309 + -1.5
233,312 + -1.4
233,318 - -1.0
233,324 - -1.3
233,325 - 1.5
233,327 + -0.7
233,330 - -4.5
233,331 - -0.1
233,331 - -0.6
233,334 + -0.5
233,338 - -4.1
233,340 + 0.0
233,346 - 1.2
233,347 + -1.4
233,349 + -0.9
233,353 + -1.6
233,356 + -0.9
233,356 - -1.3
233,359 - -1.3
233,360 - -2.2
233,361 - -1.7
233,370 - -1.2
233,374 + -1.9
233,385 + 0.4
233,386 - -3.4
233,485 - -0.7
233,502 - -1.9
233,508 + -2.3
233,513 + -0.3
233,514 - -0.2
233,639 + -2.6
233,830 + 0.9
233,860 - -2.5
233,926 + -3.3
233,950 - -0.5
233,966 + -1.9
234,238 + -0.7