Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2453

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2452: 10820 - HMMPfam-Ribonuclease H2 non-catalytic subunit (Ylr154p-like)-PF08615, at 165209 to 166286 10820 mRNA_2453: 10821 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 166755 to 168701 10821 mRNA_2454: 10822 - K12823 DDX5, DBP2 ATP-dependent RNA helicase DDX5/DBP2, at 169687 to 172594 10822

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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165,847 - 10820 mRNA_2452 0.59 -2.2
165,917 - 10820 mRNA_2452 0.66 -3.5
166,296 - -2.5
166,605 - -2.9
167,048 + 10821 mRNA_2453 0.15 -1.1
167,311 - 10821 mRNA_2453 0.29 -1.1
167,484 + 10821 mRNA_2453 0.37 -1.5
167,635 + 10821 mRNA_2453 0.45 -2.3
167,744 + 10821 mRNA_2453 0.51 -3.1
167,785 + 10821 mRNA_2453 0.53 -0.3
167,899 - 10821 mRNA_2453 0.59 -0.0
168,065 - 10821 mRNA_2453 0.67 -1.3
168,367 - 10821 mRNA_2453 0.83 -1.3
168,389 + 10821 mRNA_2453 0.84 -1.9
168,524 + -1.4
168,613 - -1.4
168,634 - -1.7
168,649 - -1.5
168,659 - -2.3
168,737 + -0.2
168,756 - -3.9
168,778 - -2.3
168,790 + -0.7
168,792 + 0.7
168,794 + -3.1
168,797 + 0.7
168,797 + -0.2
168,802 - -0.4
168,804 + -1.2
168,808 - -0.5
168,818 + -0.6
168,819 - -1.5
168,821 - -0.1
168,822 + -0.6
168,824 + -0.4
168,824 + -0.2
168,840 + -0.4
168,846 + -2.4
168,861 - -0.1
168,883 - 0.2
168,912 - -2.9
168,921 + -1.2
168,925 - -0.2
168,944 + -1.0
168,949 + -2.4
168,953 + -0.7
168,953 - -0.4
168,965 - 0.4
168,965 + -2.1
168,967 + -2.3
168,973 - -2.8
169,002 - -1.5
169,006 - -3.2
169,009 - 0.7
169,010 - -2.0
169,012 + -1.0
169,013 - -2.7
169,019 + -3.1
169,023 - -2.9
169,025 - -0.7
169,025 - -0.9
169,026 + -1.4
169,027 - -1.5
169,034 + 1.8
169,036 - -1.0
169,041 - -1.5
169,041 - -0.3
169,046 + -2.3
169,048 - 2.0
169,048 - -2.0
169,050 - -2.2
169,053 + 0.1
169,053 + -2.4
169,057 - 0.5
169,059 + -1.2
169,089 - 0.3
169,090 - 0.7
169,097 - -1.8
169,101 + -0.4
169,101 + -1.6
169,102 + -2.3
169,103 + 0.4
169,105 + -1.6
169,106 + 0.3
169,107 + -1.1
169,107 - -2.6
169,108 + -0.9
169,110 - -0.5
169,119 - -0.3
169,124 + -0.4
169,138 + 0.4
169,155 - -3.7
169,172 - -2.6
169,178 + -1.7
169,179 - -1.1
169,184 - -2.6
169,185 + -0.8
169,198 + 0.6
169,211 - -1.7
169,291 - -2.4
169,300 + -0.3
169,450 + 0.2
169,683 + -1.7