Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2452

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2451: 10819 - Hypothetical Protein, at 163388 to 164949 10819 mRNA_2452: 10820 - HMMPfam-Ribonuclease H2 non-catalytic subunit (Ylr154p-like)-PF08615, at 165209 to 166286 10820 mRNA_2453: 10821 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 166755 to 168701 10821

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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164,234 + 10819 mRNA_2451 0.54 -0.8
164,690 - 10819 mRNA_2451 0.83 0.3
164,801 + -1.9
164,829 + -1.2
164,934 - -1.1
164,976 - -0.5
165,075 + -3.0
165,130 + 0.1
165,241 - -0.8
165,261 + 0.5
165,427 + 10820 mRNA_2452 0.20 -1.2
165,427 + 10820 mRNA_2452 0.20 0.2
165,847 - 10820 mRNA_2452 0.59 -2.2
165,917 - 10820 mRNA_2452 0.66 -3.5
166,296 - -2.5
166,605 - -2.9
167,048 + 10821 mRNA_2453 0.15 -1.1