Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2450

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2449: 10817 - KOG1343 Histone deacetylase complex, catalytic component HDA1, at 159950 to 161445 10817 mRNA_2450: 10818 - KOG3037 Cell membrane glycoprotein, at 161540 to 163035 10818 mRNA_2451: 10819 - Hypothetical Protein, at 163388 to 164949 10819

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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161,173 + 10817 mRNA_2449 0.82 0.9
161,281 - 10817 mRNA_2449 0.89 -0.5
161,434 + 0.0
161,465 + -0.9
161,905 + 10818 mRNA_2450 0.24 -1.3
162,014 + 10818 mRNA_2450 0.32 -0.0
162,272 + 10818 mRNA_2450 0.49 -2.5
162,291 - 10818 mRNA_2450 0.50 0.4
162,602 + 10818 mRNA_2450 0.71 -3.3
162,604 - 10818 mRNA_2450 0.71 -0.5
162,724 - 10818 mRNA_2450 0.79 2.1
162,862 - 10818 mRNA_2450 0.88 -0.2
162,891 + -2.1
162,902 - -1.7
162,919 + -1.0
163,053 + -2.3
163,063 - -0.2
163,063 - -1.7
163,067 - -0.5
163,077 - -3.1
163,484 + -0.5
163,518 + -2.6
163,686 + 10819 mRNA_2451 0.19 -3.4
163,985 + 10819 mRNA_2451 0.38 0.0