Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2449

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2448: 10816 - Hypothetical Protein, at 157035 to 159573 10816 mRNA_2449: 10817 - KOG1343 Histone deacetylase complex, catalytic component HDA1, at 159950 to 161445 10817 mRNA_2450: 10818 - KOG3037 Cell membrane glycoprotein, at 161540 to 163035 10818

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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158,977 - 10816 mRNA_2448 0.76 -1.8
159,086 + 10816 mRNA_2448 0.81 -2.1
159,394 - -1.6
159,424 + -1.3
159,433 - -0.8
159,522 - 0.0
159,543 - 0.1
159,643 - -1.5
159,831 + -2.0
159,851 + -2.6
159,980 - 0.4
160,001 - -1.3
160,009 - -1.7
160,272 - 10817 mRNA_2449 0.22 1.0
160,425 - 10817 mRNA_2449 0.32 0.4
161,173 + 10817 mRNA_2449 0.82 0.9
161,281 - 10817 mRNA_2449 0.89 -0.5
161,434 + 0.0
161,465 + -0.9
161,905 + 10818 mRNA_2450 0.24 -1.3
162,014 + 10818 mRNA_2450 0.32 -0.0
162,272 + 10818 mRNA_2450 0.49 -2.5
162,291 - 10818 mRNA_2450 0.50 0.4