Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2448

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2447: 10815 - Hypothetical Protein, at 155632 to 156162 10815 mRNA_2448: 10816 - Hypothetical Protein, at 157035 to 159573 10816 mRNA_2449: 10817 - KOG1343 Histone deacetylase complex, catalytic component HDA1, at 159950 to 161445 10817

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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156,037 - 10815 mRNA_2447 0.76 -2.1
156,041 - 10815 mRNA_2447 0.77 -0.6
156,044 + 10815 mRNA_2447 0.78 -1.2
156,047 + 10815 mRNA_2447 0.78 0.4
156,049 + 10815 mRNA_2447 0.79 1.9
156,065 + 10815 mRNA_2447 0.82 -2.5
156,069 + 10815 mRNA_2447 0.82 -1.4
156,079 - 10815 mRNA_2447 0.84 -1.9
156,079 - 10815 mRNA_2447 0.84 -0.9
156,079 - 10815 mRNA_2447 0.84 -2.5
156,086 - 10815 mRNA_2447 0.85 -1.6
156,106 + 10815 mRNA_2447 0.89 -0.7
156,110 + -3.0
156,129 - -0.1
156,141 + -1.2
156,150 + -2.5
156,170 - -2.6
156,171 - -0.0
156,182 + -1.3
156,290 - -1.1
156,291 - -0.1
156,297 + -3.1
156,331 + -0.5
156,335 + 0.4
156,337 + -1.2
156,338 + 1.5
156,350 - -3.0
156,353 + 0.3
156,397 - 1.1
156,401 + -1.2
156,402 + -1.5
156,407 + -1.0
156,415 + -0.7
156,417 + -0.2
156,431 + -0.4
156,435 + -0.8
156,450 + -2.6
156,467 + -0.9
156,493 - -1.2
156,503 - -0.7
156,507 + 0.7
156,523 - -1.3
156,525 + -1.2
156,529 - -1.6
156,534 - 0.3
156,535 + -1.8
156,543 + -0.7
156,545 - 0.2
156,549 + -1.9
156,560 - -3.2
156,568 + -1.2
156,571 - 0.8
156,593 - -0.6
156,597 - 0.5
156,599 - -1.3
156,600 - -0.4
156,609 - -2.5
156,612 + -0.2
156,614 + 1.2
156,620 + -3.9
156,622 + 0.5
156,623 + -1.3
156,631 + -0.8
156,705 - -0.3
156,715 - -1.5
156,720 - -0.9
156,723 - -1.8
156,732 + -3.3
156,733 + -2.4
156,742 - -2.2
156,746 - -1.8
156,756 - -2.1
156,801 + -1.8
156,883 + -3.1
156,919 + -0.5
156,938 + 0.0
157,027 + -2.5
157,047 + -2.7
157,053 - -1.9
157,177 + 0.8
157,476 - 10816 mRNA_2448 0.17 -0.4
157,634 - 10816 mRNA_2448 0.24 -2.9
157,640 - 10816 mRNA_2448 0.24 -0.9
157,647 + 10816 mRNA_2448 0.24 -0.2
157,788 - 10816 mRNA_2448 0.30 0.1
157,793 - 10816 mRNA_2448 0.30 -2.7
157,795 + 10816 mRNA_2448 0.30 -1.0
158,082 + 10816 mRNA_2448 0.41 -3.0
158,656 - 10816 mRNA_2448 0.64 -2.0
158,977 - 10816 mRNA_2448 0.76 -1.8
159,086 + 10816 mRNA_2448 0.81 -2.1
159,394 - -1.6
159,424 + -1.3
159,433 - -0.8
159,522 - 0.0
159,543 - 0.1
159,643 - -1.5
159,831 + -2.0
159,851 + -2.6
159,980 - 0.4
160,001 - -1.3
160,009 - -1.7
160,272 - 10817 mRNA_2449 0.22 1.0
160,425 - 10817 mRNA_2449 0.32 0.4