Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2442

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2441: 10809 - KOG1284 Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase, at 138011 to 140441 10809 mRNA_2442: 10810 - HMMPfam-ACT domain-PF13840,SUPERFAMILY--SSF55021, at 140857 to 142808 10810 mRNA_2443: 10811 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 143347 to 145508 10811

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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140,039 - 10809 mRNA_2441 0.83 -2.3
140,190 - 10809 mRNA_2441 0.90 -1.0
140,214 + -0.5
140,317 - -1.4
140,389 + -3.5
140,551 - -2.8
140,556 + -2.1
140,584 - -0.1
140,625 - -0.4
140,659 - -2.4
140,659 + -0.9
140,663 + 0.3
140,664 + -0.6
140,670 - -2.4
140,679 - -0.1
140,697 + -0.7
140,729 - -1.3
140,729 - -0.8
140,729 - -1.5
140,730 - -2.0
140,735 - -1.1
140,752 + -0.5
140,752 - -0.9
140,781 - -0.1
140,787 + -1.1
140,827 - -2.7
140,955 - -1.6
141,013 + 0.1
141,694 - 10810 mRNA_2442 0.43 -0.4
142,122 + 10810 mRNA_2442 0.65 -1.5
142,244 - 10810 mRNA_2442 0.71 -1.2
142,246 + 10810 mRNA_2442 0.71 -2.9
142,425 - 10810 mRNA_2442 0.80 -0.8
142,500 + 10810 mRNA_2442 0.84 -1.7
142,504 - 10810 mRNA_2442 0.84 -2.2
142,670 - -3.4
142,680 + 1.3
142,802 - -1.8
142,810 - -2.6
142,819 + -0.7
142,825 + -1.3
142,832 + -0.5
142,847 + -0.1
142,926 + -1.6
143,001 - -2.1
143,140 - 0.6
143,140 + -0.4
143,140 - -1.2
143,140 - -1.9
143,144 - 0.4
143,146 + -0.1
143,147 + -1.6
143,150 + -2.1
143,151 - -0.8
143,164 - 0.5
143,167 + -3.7
143,266 + -2.4
143,279 + -2.4
143,284 - -2.3
143,294 + -2.0
143,299 - -1.1
143,302 + -2.7
143,413 - -1.2
143,440 + -2.3
143,578 + 10811 mRNA_2443 0.11 -2.6
143,578 + 10811 mRNA_2443 0.11 -0.9
143,597 - 10811 mRNA_2443 0.12 -0.6
143,755 - 10811 mRNA_2443 0.19 -1.2
143,762 + 10811 mRNA_2443 0.19 -1.7