Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2428

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2427: 10795 - Hypothetical Protein, at 96248 to 96907 10795 mRNA_2428: 10796 - KOG0583 Serine/threonine protein kinase, at 96972 to 102025 10796 mRNA_2429: 10797 - K03347 CUL1, CDC53 cullin 1, at 102257 to 105935 10797

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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96,107 + -0.2
96,148 - -2.6
96,152 - -0.5
96,247 - 1.5
96,267 - -2.9
96,272 + 0.2
96,278 + -2.7
96,280 - -0.3
96,286 - 1.3
96,299 - -2.0
96,308 - -3.4
96,317 - 10795 mRNA_2427 0.10 -2.4
96,328 + 10795 mRNA_2427 0.12 -0.6
96,412 + 10795 mRNA_2427 0.25 0.4
96,423 - 10795 mRNA_2427 0.27 -0.8
96,453 + 10795 mRNA_2427 0.31 -0.6
96,513 - 10795 mRNA_2427 0.40 -1.4
96,535 + 10795 mRNA_2427 0.43 -1.0
96,543 - 10795 mRNA_2427 0.45 -2.3
96,547 - 10795 mRNA_2427 0.45 0.2
96,548 + 10795 mRNA_2427 0.45 -3.3
96,566 + 10795 mRNA_2427 0.48 -2.4
96,575 + 10795 mRNA_2427 0.50 -1.5
96,583 - 10795 mRNA_2427 0.51 -1.4
96,583 + 10795 mRNA_2427 0.51 0.5
96,584 + 10795 mRNA_2427 0.51 -2.2
96,586 + 10795 mRNA_2427 0.51 -0.3
96,634 + 10795 mRNA_2427 0.58 -3.4
96,691 - 10795 mRNA_2427 0.67 1.4
96,705 + 10795 mRNA_2427 0.69 -2.8
96,709 + 10795 mRNA_2427 0.70 -1.8
96,809 + 10795 mRNA_2427 0.85 -0.5
96,855 - -2.5
96,859 + -0.0
96,861 + -2.5
96,874 + -0.6
97,057 + 0.6
97,128 + -2.0
97,276 - -1.2
97,621 + 10796 mRNA_2428 0.13 -2.4
97,711 + 10796 mRNA_2428 0.15 -2.4
97,769 - 10796 mRNA_2428 0.16 -3.1
97,770 + 10796 mRNA_2428 0.16 -2.0
97,849 - 10796 mRNA_2428 0.17 -0.9
98,184 - 10796 mRNA_2428 0.24 -0.9
98,609 + 10796 mRNA_2428 0.32 -1.8
98,897 - 10796 mRNA_2428 0.38 -3.1
98,942 - 10796 mRNA_2428 0.39 -1.3
99,059 - 10796 mRNA_2428 0.41 -2.8
99,094 - 10796 mRNA_2428 0.42 -1.4
99,369 + 10796 mRNA_2428 0.47 -0.4
99,497 - 10796 mRNA_2428 0.50 -0.1
99,679 - 10796 mRNA_2428 0.54 -1.8
100,375 + 10796 mRNA_2428 0.67 -1.4
100,704 - 10796 mRNA_2428 0.74 -1.9
100,777 - 10796 mRNA_2428 0.75 -0.8
101,366 + 10796 mRNA_2428 0.87 -0.3
101,387 - 10796 mRNA_2428 0.87 -3.9
101,397 - 10796 mRNA_2428 0.88 -1.1
101,517 - 10796 mRNA_2428 0.90 0.1
101,543 + -0.7
101,546 - -3.5
101,675 + -0.0
101,683 + 1.4
101,849 + -1.9
101,914 + -2.2
101,963 + -2.5
101,990 - -2.1
102,217 + -1.3
102,251 - -2.0