Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2418

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2417: 10785 - SUPERFAMILY--SSF52047, at 74792 to 76110 10785 mRNA_2418: 10786 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 77070 to 79296 10786 mRNA_2419: 10787 - HMMPfam-Domain of unknown function (DUF4385)-PF14328, at 79410 to 80151 10787

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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76,075 - -2.7
76,116 - -0.3
76,120 - -0.8
76,168 - -0.1
76,252 - -3.1
76,258 - -0.5
76,267 + -2.1
76,425 - -1.5
76,446 + 1.3
76,447 - -2.1
76,460 + -1.0
76,557 - -3.2
76,594 - -1.0
76,974 + -1.3
77,573 - 10786 mRNA_2418 0.23 -1.0
77,585 + 10786 mRNA_2418 0.23 -0.2
77,683 - 10786 mRNA_2418 0.28 -0.1
77,851 + 10786 mRNA_2418 0.35 0.4
77,868 + 10786 mRNA_2418 0.36 -0.3
78,000 + 10786 mRNA_2418 0.42 0.5
78,187 - 10786 mRNA_2418 0.50 -0.6
78,319 + 10786 mRNA_2418 0.56 -1.6
78,411 - 10786 mRNA_2418 0.60 -0.2
78,849 + 10786 mRNA_2418 0.80 -0.5
78,850 + 10786 mRNA_2418 0.80 -1.0
78,860 + 10786 mRNA_2418 0.80 -2.0
78,861 - 10786 mRNA_2418 0.80 -3.6
78,862 - 10786 mRNA_2418 0.80 -0.8
78,869 + 10786 mRNA_2418 0.81 -2.2
79,010 + 10786 mRNA_2418 0.87 -2.3
79,075 - -3.0
79,315 - -0.8
79,322 - -2.5
79,745 - 10787 mRNA_2419 0.45 -2.3
79,768 + 10787 mRNA_2419 0.48 0.1
79,852 - 10787 mRNA_2419 0.60 -0.2
80,030 - 10787 mRNA_2419 0.84 -1.1
80,044 - 10787 mRNA_2419 0.85 -0.5