Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2412

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2411: 10779 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF81383, at 60970 to 61863 10779 mRNA_2412: 10780 - K04378 SRF serum response factor, at 62318 to 64458 10780 mRNA_2413: 10781 - K13108 SNIP1 smad nuclear-interacting protein 1, at 64935 to 66206 10781

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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61,418 - 10779 mRNA_2411 0.50 -1.7
61,458 + 10779 mRNA_2411 0.55 0.7
61,481 + 10779 mRNA_2411 0.57 -2.9
61,589 + 10779 mRNA_2411 0.69 -1.8
61,667 + 10779 mRNA_2411 0.78 -1.0
61,759 - 10779 mRNA_2411 0.88 -2.5
61,768 - 10779 mRNA_2411 0.89 -2.1
61,836 + -0.3
61,903 - -1.5
62,050 - -1.1
62,113 + -1.9
62,200 - -2.9
62,777 + 10780 mRNA_2412 0.21 -0.3
62,808 + 10780 mRNA_2412 0.23 -2.2
63,079 - 10780 mRNA_2412 0.36 -3.1
63,583 - 10780 mRNA_2412 0.59 0.7
63,747 - 10780 mRNA_2412 0.67 0.3
63,791 - 10780 mRNA_2412 0.69 -0.7
63,835 + 10780 mRNA_2412 0.71 -1.7
63,989 - 10780 mRNA_2412 0.78 -2.5
64,275 + -1.5
64,299 - 1.8
64,712 + -1.1
64,722 - -0.4
64,768 - -1.0
64,880 + -0.6
64,899 - -0.7
64,899 + -0.8
64,900 + -0.4
64,902 - -2.4
64,902 + -1.3
64,913 + -3.3
64,928 + 0.1