Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2403

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2402: 10770 - K07870 RHOT1, ARHT1 Ras homolog gene family, member T1, at 33666 to 36845 10770 mRNA_2403: 10771 - HMMPfam-Protein of unknown function (DUF2462)-PF09495, at 37174 to 37596 10771 mRNA_2404: 10772 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 37941 to 40154 10772

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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36,477 + 10770 mRNA_2402 0.88 -2.7
36,512 + 10770 mRNA_2402 0.89 -2.3
36,538 - -0.5
36,831 - -2.0
36,945 - -2.0
36,951 + -1.1
36,958 + -2.6
36,963 + -1.1
36,963 + -2.9
36,964 - -2.0
36,989 + -0.1
37,071 + -1.3
37,122 - -0.5
37,401 + 10771 mRNA_2403 0.54 -1.1
37,579 + -1.6
37,802 + -1.2
37,808 - -1.7
37,860 - -1.5
37,863 + -2.8
37,864 + -1.0
37,983 + -1.3
38,036 + -0.7
38,291 + 10772 mRNA_2404 0.16 -1.9
38,306 - 10772 mRNA_2404 0.16 0.7
38,454 - 10772 mRNA_2404 0.23 -2.3
38,589 + 10772 mRNA_2404 0.29 -1.1