Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2402

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2401: 10769 - HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SMART-von Willebrand factor (vWF) type A domain-SM00327,SUPERFAMILY--SSF53300, at 31394 to 33493 10769 mRNA_2402: 10770 - K07870 RHOT1, ARHT1 Ras homolog gene family, member T1, at 33666 to 36845 10770 mRNA_2403: 10771 - HMMPfam-Protein of unknown function (DUF2462)-PF09495, at 37174 to 37596 10771

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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32,695 - 10769 mRNA_2401 0.62 -1.6
32,699 + 10769 mRNA_2401 0.62 -0.3
32,711 + 10769 mRNA_2401 0.63 -2.0
32,731 - 10769 mRNA_2401 0.64 -0.1
32,819 - 10769 mRNA_2401 0.68 -2.0
32,834 - 10769 mRNA_2401 0.69 -2.4
32,857 + 10769 mRNA_2401 0.70 -1.0
33,000 - 10769 mRNA_2401 0.76 -1.1
33,005 - 10769 mRNA_2401 0.77 -1.9
33,008 - 10769 mRNA_2401 0.77 -1.3
33,143 - 10769 mRNA_2401 0.83 0.1
33,153 + 10769 mRNA_2401 0.84 0.3
33,278 + 10769 mRNA_2401 0.90 0.2
33,284 - -2.0
33,290 - -0.0
33,310 + -0.4
33,426 + -2.3
33,439 - -1.7
33,442 - -1.3
33,485 + -1.4
33,592 - -0.3
33,598 + -0.9
33,738 - -0.4
33,752 + -3.1
33,874 - -0.9
34,149 - 10770 mRNA_2402 0.15 -2.1
34,180 - 10770 mRNA_2402 0.16 -1.2
34,349 - 10770 mRNA_2402 0.21 -0.4
34,353 - 10770 mRNA_2402 0.22 -0.4
34,378 - 10770 mRNA_2402 0.22 -0.9
34,648 + 10770 mRNA_2402 0.31 -1.9
35,532 - 10770 mRNA_2402 0.59 -0.7
35,639 - 10770 mRNA_2402 0.62 -1.4
35,705 - 10770 mRNA_2402 0.64 -0.9
35,954 - 10770 mRNA_2402 0.72 -1.2
36,477 + 10770 mRNA_2402 0.88 -2.7
36,512 + 10770 mRNA_2402 0.89 -2.3
36,538 - -0.5
36,831 - -2.0
36,945 - -2.0
36,951 + -1.1
36,958 + -2.6
36,963 + -1.1
36,963 + -2.9
36,964 - -2.0
36,989 + -0.1
37,071 + -1.3
37,122 - -0.5
37,401 + 10771 mRNA_2403 0.54 -1.1
37,579 + -1.6
37,802 + -1.2
37,808 - -1.7