Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2399

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2398: 10766 - SUPERFAMILY--SSF52047, at 24008 to 25280 10766 mRNA_2399: 10767 - Hypothetical Protein, at 25510 to 29581 10767 mRNA_2400: 10768 - Hypothetical Protein, at 29855 to 31003 10768

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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24,579 - 10766 mRNA_2398 0.45 -1.3
24,581 - 10766 mRNA_2398 0.45 -2.2
24,720 - 10766 mRNA_2398 0.56 -0.7
24,750 + 10766 mRNA_2398 0.58 -1.9
24,773 + 10766 mRNA_2398 0.60 -2.3
24,856 - 10766 mRNA_2398 0.67 -2.7
24,895 + 10766 mRNA_2398 0.70 0.4
24,895 + 10766 mRNA_2398 0.70 -2.1
25,005 - 10766 mRNA_2398 0.78 -2.5
25,028 + 10766 mRNA_2398 0.80 -2.5
25,164 + 0.5
25,306 + -1.1
25,422 + -1.4
25,454 - -2.3
25,493 - -2.7
25,693 + -1.7
25,696 - -0.7
25,750 - -1.9
25,857 + -0.9
26,023 + 10767 mRNA_2399 0.13 -1.9
26,450 - 10767 mRNA_2399 0.23 -0.9
26,489 + 10767 mRNA_2399 0.24 -2.2
26,591 - 10767 mRNA_2399 0.27 1.1
26,591 - 10767 mRNA_2399 0.27 0.4
26,617 - 10767 mRNA_2399 0.27 -1.8
26,824 - 10767 mRNA_2399 0.32 -1.8
26,824 - 10767 mRNA_2399 0.32 -0.5
26,863 + 10767 mRNA_2399 0.33 -0.7
26,971 + 10767 mRNA_2399 0.36 -2.8
27,089 + 10767 mRNA_2399 0.39 -1.0
27,130 - 10767 mRNA_2399 0.40 0.3
27,598 - 10767 mRNA_2399 0.51 -1.8
27,674 - 10767 mRNA_2399 0.53 0.8
27,819 + 10767 mRNA_2399 0.57 -2.6
27,823 - 10767 mRNA_2399 0.57 -1.6
27,849 + 10767 mRNA_2399 0.57 -2.6
27,934 - 10767 mRNA_2399 0.60 -3.0
27,943 + 10767 mRNA_2399 0.60 -2.5
27,946 - 10767 mRNA_2399 0.60 -0.6
27,947 + 10767 mRNA_2399 0.60 -2.4
28,024 - 10767 mRNA_2399 0.62 -1.3
28,030 + 10767 mRNA_2399 0.62 -2.4
28,161 - 10767 mRNA_2399 0.65 -3.8
28,542 + 10767 mRNA_2399 0.74 -2.7
28,759 + 10767 mRNA_2399 0.80 0.9
29,022 + 10767 mRNA_2399 0.86 -1.5
29,148 - 10767 mRNA_2399 0.89 -2.9
29,148 - 10767 mRNA_2399 0.89 -0.4
29,162 + 10767 mRNA_2399 0.90 0.9
29,205 + -1.7
29,207 + -0.8
29,243 - 0.1
29,343 - 0.5
29,558 - -4.0
29,638 + -2.1
29,638 + -4.4
29,743 + -4.9
29,920 + -2.2
29,921 + -1.8
29,995 - 10768 mRNA_2400 0.12 -1.7
29,997 + 10768 mRNA_2400 0.12 0.0
30,089 - 10768 mRNA_2400 0.20 -0.7
30,104 + 10768 mRNA_2400 0.22 -0.4
30,125 + 10768 mRNA_2400 0.23 -3.6
30,209 - 10768 mRNA_2400 0.31 -1.3
30,209 - 10768 mRNA_2400 0.31 -2.2
30,216 - 10768 mRNA_2400 0.31 -1.2
30,222 - 10768 mRNA_2400 0.32 1.9
30,278 + 10768 mRNA_2400 0.37 -0.5
30,460 + 10768 mRNA_2400 0.53 -1.8
30,504 - 10768 mRNA_2400 0.56 -0.8
30,522 + 10768 mRNA_2400 0.58 -0.1
30,534 - 10768 mRNA_2400 0.59 -1.9
30,571 - 10768 mRNA_2400 0.62 -0.2