Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2397

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2396: 10764 - K14169 CTU2, NCS2 cytoplasmic tRNA 2-thiolation protein 2, at 19108 to 21174 10764 mRNA_2397: 10765 - Hypothetical Protein, at 21326 to 23910 10765 mRNA_2398: 10766 - SUPERFAMILY--SSF52047, at 24008 to 25280 10766

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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20,503 - 10764 mRNA_2396 0.67 -0.9
20,539 - 10764 mRNA_2396 0.69 -0.9
20,699 + 10764 mRNA_2396 0.77 -0.1
20,982 + -1.2
21,395 - -0.3
21,705 - 10765 mRNA_2397 0.15 -1.2
21,849 + 10765 mRNA_2397 0.20 -0.5
21,851 + 10765 mRNA_2397 0.20 -0.7
21,857 - 10765 mRNA_2397 0.21 -1.3
21,971 - 10765 mRNA_2397 0.25 -2.2
21,987 - 10765 mRNA_2397 0.26 -1.4
22,005 + 10765 mRNA_2397 0.26 -0.8
22,007 - 10765 mRNA_2397 0.26 -1.3
22,290 - 10765 mRNA_2397 0.37 -2.9
22,292 - 10765 mRNA_2397 0.37 -1.1
22,295 - 10765 mRNA_2397 0.37 -1.4
22,305 - 10765 mRNA_2397 0.38 -1.3
22,442 - 10765 mRNA_2397 0.43 -1.8
22,574 + 10765 mRNA_2397 0.48 -0.5
22,578 - 10765 mRNA_2397 0.48 -3.1
22,586 - 10765 mRNA_2397 0.49 0.0
22,776 + 10765 mRNA_2397 0.56 -1.2
22,789 + 10765 mRNA_2397 0.57 -1.1
22,899 - 10765 mRNA_2397 0.61 0.5
22,924 - 10765 mRNA_2397 0.62 0.3
22,941 - 10765 mRNA_2397 0.62 -0.4
22,948 + 10765 mRNA_2397 0.63 -1.8
23,076 - 10765 mRNA_2397 0.68 0.1
23,087 - 10765 mRNA_2397 0.68 -0.4
23,205 - 10765 mRNA_2397 0.73 -1.2
23,224 - 10765 mRNA_2397 0.73 -1.0
23,495 - 10765 mRNA_2397 0.84 -0.8
23,667 - -1.9
23,682 + -1.4
23,780 - -0.5
23,789 + 0.2
23,790 + -0.5
23,814 + -1.5
23,941 - -3.1
23,953 + 1.2
23,955 + 1.0
24,014 + -1.1
24,021 + -1.5
24,121 + -1.3
24,133 - -2.2
24,145 + 10766 mRNA_2398 0.11 -2.4
24,169 - 10766 mRNA_2398 0.13 1.6
24,440 - 10766 mRNA_2398 0.34 1.7
24,579 - 10766 mRNA_2398 0.45 -1.3
24,581 - 10766 mRNA_2398 0.45 -2.2
24,720 - 10766 mRNA_2398 0.56 -0.7
24,750 + 10766 mRNA_2398 0.58 -1.9
24,773 + 10766 mRNA_2398 0.60 -2.3
24,856 - 10766 mRNA_2398 0.67 -2.7
24,895 + 10766 mRNA_2398 0.70 0.4
24,895 + 10766 mRNA_2398 0.70 -2.1