Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2396

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2395: 10763 - SMART-catalytic domain of ctd-like phosphatases-SM00577, at 16868 to 18999 10763 mRNA_2396: 10764 - K14169 CTU2, NCS2 cytoplasmic tRNA 2-thiolation protein 2, at 19108 to 21174 10764 mRNA_2397: 10765 - Hypothetical Protein, at 21326 to 23910 10765

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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18,209 - 10763 mRNA_2395 0.63 -1.0
18,268 - 10763 mRNA_2395 0.66 -3.2
18,279 - 10763 mRNA_2395 0.66 -2.6
18,408 - 10763 mRNA_2395 0.72 -1.3
18,411 + 10763 mRNA_2395 0.72 -0.5
18,500 + 10763 mRNA_2395 0.77 -0.1
18,525 - 10763 mRNA_2395 0.78 -1.8
18,585 - 10763 mRNA_2395 0.81 -2.4
18,633 + 10763 mRNA_2395 0.83 -1.8
18,640 - 10763 mRNA_2395 0.83 -0.1
18,689 - 10763 mRNA_2395 0.85 -0.7
18,772 - 10763 mRNA_2395 0.89 0.2
18,798 + -1.4
19,076 + -1.0
19,087 - -2.0
19,228 + -0.3
19,244 - -0.3
19,352 + 10764 mRNA_2396 0.12 -2.0
19,513 - 10764 mRNA_2396 0.20 -1.8
19,518 + 10764 mRNA_2396 0.20 -2.0
19,528 + 10764 mRNA_2396 0.20 -2.7
19,571 - 10764 mRNA_2396 0.22 -1.0
19,682 + 10764 mRNA_2396 0.28 -5.0
19,813 - 10764 mRNA_2396 0.34 -3.1
20,198 - 10764 mRNA_2396 0.53 -0.3
20,272 - 10764 mRNA_2396 0.56 -1.8
20,503 - 10764 mRNA_2396 0.67 -0.9
20,539 - 10764 mRNA_2396 0.69 -0.9
20,699 + 10764 mRNA_2396 0.77 -0.1
20,982 + -1.2
21,395 - -0.3
21,705 - 10765 mRNA_2397 0.15 -1.2
21,849 + 10765 mRNA_2397 0.20 -0.5
21,851 + 10765 mRNA_2397 0.20 -0.7
21,857 - 10765 mRNA_2397 0.21 -1.3
21,971 - 10765 mRNA_2397 0.25 -2.2
21,987 - 10765 mRNA_2397 0.26 -1.4
22,005 + 10765 mRNA_2397 0.26 -0.8
22,007 - 10765 mRNA_2397 0.26 -1.3