Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2394

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2393: 10761 - HMMPfam-Prolyl oligopeptidase family-PF00326,HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 13442 to 14834 10761 mRNA_2394: 10762 - K03648 UNG, UDG uracil-DNA glycosylase, at 15133 to 16619 10762 mRNA_2395: 10763 - SMART-catalytic domain of ctd-like phosphatases-SM00577, at 16868 to 18999 10763

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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14,180 + 10761 mRNA_2393 0.53 -0.8
14,223 - 10761 mRNA_2393 0.56 -3.3
14,225 + 10761 mRNA_2393 0.56 -2.8
14,240 + 10761 mRNA_2393 0.57 -0.1
14,312 + 10761 mRNA_2393 0.62 -1.5
14,356 - 10761 mRNA_2393 0.66 -3.2
14,379 + 10761 mRNA_2393 0.67 -1.5
14,419 + 10761 mRNA_2393 0.70 -1.8
14,474 + 10761 mRNA_2393 0.74 -3.5
14,501 - 10761 mRNA_2393 0.76 -1.1
14,544 + 10761 mRNA_2393 0.79 -0.8
14,635 - 10761 mRNA_2393 0.86 -1.5
14,764 - 0.1
14,793 - -1.1
14,960 + -1.3
15,084 - 0.3
15,256 + -0.6
15,266 - 0.7
15,407 + 10762 mRNA_2394 0.18 -0.6
15,413 + 10762 mRNA_2394 0.19 -1.2
15,430 - 10762 mRNA_2394 0.20 -2.2
15,658 + 10762 mRNA_2394 0.35 -0.3
15,669 + 10762 mRNA_2394 0.36 -0.0
15,700 - 10762 mRNA_2394 0.38 -0.9
15,702 - 10762 mRNA_2394 0.38 1.0
15,704 + 10762 mRNA_2394 0.38 -0.1
15,709 + 10762 mRNA_2394 0.39 -1.3
16,094 + 10762 mRNA_2394 0.65 -1.0
16,110 - 10762 mRNA_2394 0.66 0.0
16,264 + 10762 mRNA_2394 0.76 -0.5
16,274 - 10762 mRNA_2394 0.77 -1.4
16,317 + 10762 mRNA_2394 0.80 -0.7
16,323 + 10762 mRNA_2394 0.80 -1.9
16,329 - 10762 mRNA_2394 0.80 -2.6
16,375 + 10762 mRNA_2394 0.84 -3.0
16,439 - 10762 mRNA_2394 0.88 1.2
16,469 + 10762 mRNA_2394 0.90 -1.9
16,561 + -0.9
16,563 - -0.3
16,580 + -0.9
16,625 + -0.9
16,696 - -2.5
16,724 + -2.1
16,850 + -1.2
16,869 - -1.4
16,870 + -1.9
16,874 + 0.1
16,911 - -0.4
16,914 - 0.0
16,919 + -4.2
17,000 - -0.1
17,036 + -1.1
17,198 + 10763 mRNA_2395 0.15 -0.5
17,273 + 10763 mRNA_2395 0.19 -2.1
17,431 - 10763 mRNA_2395 0.26 -2.1
17,446 - 10763 mRNA_2395 0.27 -0.3
17,449 - 10763 mRNA_2395 0.27 -3.2
17,455 + 10763 mRNA_2395 0.28 -1.2