Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2392

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2391: 10759 - HMMPfam-Chaperone for protein-folding within the ER, fungal-PF10681, at 9601 to 10907 10759 mRNA_2392: 10760 - K10364 CAPZA capping protein (actin filament) muscle Z-line, alpha, at 11217 to 13113 10760 mRNA_2393: 10761 - HMMPfam-Prolyl oligopeptidase family-PF00326,HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 13442 to 14834 10761

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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10,972 - -3.1
10,997 + -1.5
11,312 - 1.1
11,411 + 10760 mRNA_2392 0.10 0.6
11,569 - 10760 mRNA_2392 0.19 -2.2
11,722 - 10760 mRNA_2392 0.27 1.5
12,138 - 10760 mRNA_2392 0.49 -1.9
12,577 + 10760 mRNA_2392 0.72 -4.2
12,586 - 10760 mRNA_2392 0.72 -2.2
12,645 - 10760 mRNA_2392 0.75 -2.0
13,021 - -0.2
13,051 + 0.4
13,126 - -0.3
13,182 + -2.6
13,359 + -0.6
13,464 + -2.7
13,491 - -0.2
13,615 + 10761 mRNA_2393 0.12 -1.5
13,619 - 10761 mRNA_2393 0.13 -2.5
13,623 + 10761 mRNA_2393 0.13 -1.6
13,740 + 10761 mRNA_2393 0.21 -2.9
13,761 + 10761 mRNA_2393 0.23 -0.1
13,834 + 10761 mRNA_2393 0.28 1.1
14,032 - 10761 mRNA_2393 0.42 -2.2
14,088 - 10761 mRNA_2393 0.46 -1.7
14,088 - 10761 mRNA_2393 0.46 -2.7