Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2389

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2388: 10756 - K14781 DHR2 ATP-dependent RNA helicase DHR2, at 595 to 3686 10756 mRNA_2389: 10757 - K10901 BLM, RECQL3, SGS1 bloom syndrome protein, at 4587 to 7344 10757 mRNA_2390: 10758 - Hypothetical Protein, at 8054 to 9276 10758

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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3,782 + -1.6
3,821 + -3.3
4,050 - -2.7
4,089 - 1.1
4,160 + 0.4
4,163 - -1.4
4,185 + -1.0
4,250 - -0.0
4,312 + -1.1
4,543 - 0.4
4,544 + 0.3
4,693 + -0.2
4,810 + -3.0
4,816 + -1.6
4,819 - -0.8
4,819 - -0.7
4,879 - 10757 mRNA_2389 0.11 -1.1
4,889 + 10757 mRNA_2389 0.11 -0.7
5,047 + 10757 mRNA_2389 0.17 0.7
5,047 + 10757 mRNA_2389 0.17 -1.5
5,075 + 10757 mRNA_2389 0.18 -1.1
5,231 - 10757 mRNA_2389 0.23 -1.2
5,267 + 10757 mRNA_2389 0.25 0.8
5,306 - 10757 mRNA_2389 0.26 -2.4
5,336 - 10757 mRNA_2389 0.27 -1.8
5,390 + 10757 mRNA_2389 0.29 -3.5
5,391 - 10757 mRNA_2389 0.29 -2.0
5,432 + 10757 mRNA_2389 0.31 -2.2
5,488 - 10757 mRNA_2389 0.33 -2.2
5,494 + 10757 mRNA_2389 0.33 -2.0
5,510 - 10757 mRNA_2389 0.33 0.5
5,519 + 10757 mRNA_2389 0.34 0.8
5,561 - 10757 mRNA_2389 0.35 -0.2
5,666 - 10757 mRNA_2389 0.39 -2.8
5,920 - 10757 mRNA_2389 0.48 -1.7
5,952 + 10757 mRNA_2389 0.49 -0.1
5,990 + 10757 mRNA_2389 0.51 -1.0
6,227 + 10757 mRNA_2389 0.59 -1.0
6,238 - 10757 mRNA_2389 0.60 -2.5
6,249 + 10757 mRNA_2389 0.60 -0.6
6,388 + 10757 mRNA_2389 0.65 -0.5
6,419 + 10757 mRNA_2389 0.66 -0.1
6,546 - 10757 mRNA_2389 0.71 -1.5
6,553 + 10757 mRNA_2389 0.71 -2.6
6,660 + 10757 mRNA_2389 0.75 -1.1
6,713 + 10757 mRNA_2389 0.77 -2.5
6,938 - 10757 mRNA_2389 0.85 -0.4
6,962 + 10757 mRNA_2389 0.86 0.9
7,171 - -2.0
7,187 - -0.7
7,191 + -2.2
7,214 + -2.1
7,310 + -1.0
7,337 + -0.4
7,360 + 0.6
7,820 - -1.3