Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2383

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2382: 10750 - HMMPfam-Zinc-binding loop region of homing endonuclease-PF05551,SUPERFAMILY--SSF54060, at 760691 to 762074 10750 mRNA_2383: 10751 - Hypothetical Protein, at 762665 to 764140 10751 mRNA_2384: 10752 - K11600 RRP41, EXOSC4, SKI6 exosome complex component RRP41, at 764160 to 765511 10752

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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761,828 - 10750 mRNA_2382 0.82 -1.7
761,973 - -0.1
761,981 + -0.1
762,117 + -1.4
762,141 + -0.3
762,261 + -1.7
762,294 - -0.1
762,426 + -1.5
762,555 - -4.2
762,579 + -1.1
762,582 + 0.0
762,710 - -1.1
762,720 - -0.3
762,725 - -0.9
762,731 - -1.0
762,741 - -2.0
762,871 + 10751 mRNA_2383 0.14 -0.2
762,877 + 10751 mRNA_2383 0.14 -1.7
762,902 - 10751 mRNA_2383 0.16 1.4
763,002 - 10751 mRNA_2383 0.23 -0.5
763,007 + 10751 mRNA_2383 0.23 -4.0
763,038 - 10751 mRNA_2383 0.25 -0.7
763,041 + 10751 mRNA_2383 0.25 -2.9
763,047 + 10751 mRNA_2383 0.26 -1.8
763,051 + 10751 mRNA_2383 0.26 -1.0
763,056 - 10751 mRNA_2383 0.26 -0.8
763,064 - 10751 mRNA_2383 0.27 -1.1
763,072 + 10751 mRNA_2383 0.28 -2.3
763,299 - 10751 mRNA_2383 0.43 -0.8
763,326 - 10751 mRNA_2383 0.45 -1.6
763,497 + 10751 mRNA_2383 0.56 -1.4
763,651 - 10751 mRNA_2383 0.67 -1.3
763,803 + 10751 mRNA_2383 0.77 -1.8
763,931 - 10751 mRNA_2383 0.86 -0.8
763,945 + 10751 mRNA_2383 0.87 -1.1
764,097 + -3.4
764,112 - -1.8