Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2354

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2353: 10721 - SUPERFAMILY--SSF88713, at 689972 to 692124 10721 mRNA_2354: 10722 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 692257 to 694787 10722 mRNA_2355: 10723 - Hypothetical Protein, at 694855 to 695610 10723

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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691,276 + 10721 mRNA_2353 0.61 -3.8
691,690 - 10721 mRNA_2353 0.80 -2.4
691,701 + 10721 mRNA_2353 0.80 -0.1
691,842 - 10721 mRNA_2353 0.87 -1.2
691,961 + 0.2
691,997 - -1.7
692,138 + -0.3
692,142 - -1.2
692,257 - 0.4
692,258 - -0.2
692,260 - -2.2
692,302 + -2.7
692,306 + -2.6
692,311 + 0.6
692,320 + -0.2
692,320 - -0.2
692,334 + -0.0
692,461 + -1.6
692,463 + -3.0
692,463 + -3.5
692,469 - -0.1
692,483 - -0.3
692,493 - -1.5
692,500 + -3.2
692,772 - 10722 mRNA_2354 0.20 -3.4
693,084 + 10722 mRNA_2354 0.33 -0.3
693,322 - 10722 mRNA_2354 0.42 -0.5
693,327 + 10722 mRNA_2354 0.42 -1.6
693,335 - 10722 mRNA_2354 0.43 1.4
693,922 - 10722 mRNA_2354 0.66 -2.0
694,058 - 10722 mRNA_2354 0.71 -1.8
694,223 - 10722 mRNA_2354 0.78 0.7
694,326 + 10722 mRNA_2354 0.82 0.2
694,345 - 10722 mRNA_2354 0.82 -2.9
695,221 - 10723 mRNA_2355 0.48 -0.3
695,657 - -0.3